Array 1 1024-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIY01000080.1 Clostridium botulinum D/C strain 1274_DC contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1023 29 100.0 38 ............................. ACAAAAATATGTTTAGATATATTATATTCAGATATTCC 956 29 100.0 36 ............................. AATTTTCAATAGGAAGGATGATATTATGAGTTTTTA 891 29 100.0 36 ............................. TCTATTAATACATCTATATATTGCATGATTTCTTTG 826 29 100.0 38 ............................. TTCCAAATAAGTTCCTTGGGCATGAATAGCTTTTTCAA 759 29 100.0 37 ............................. AATAAATAAATATACAGACAAAGAGGGAAAAGACAGA 693 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 626 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 557 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 490 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 425 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 359 29 100.0 37 ............................. ATTGAGTAGATGCCCTAATTTATCTTGAAATGTACTT 293 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 228 29 100.0 38 ............................. TTATGTATTAAAACAACTACTGCTTACGCTGAAAGCGA 161 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 95 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 31 28 82.8 0 ................TA.G.-...T... | G [6] ========== ====== ====== ====== ============================= ======================================== ================== 16 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : TACGGTGCGTGGATCAACGCCAAGTTCTCTAGCTATTTGACTTTTATTTATTTTCAAATTATTTTCCTCCATAATTAATTTTAATTTATGAAGATCCTCTAACTTATCTATTTGTATTTCAGAATTAATATTCATTTGTATAATCATAATTACCTCCAGTTTATTAAATGTTGGTAATTATAGTATTATACATAAATCTAATTCTTACATCCTTAGATGATCACTTTCTTGCATTTCCATAATAGCACTTATAATATGTAAATGTTATAAGCAATGGAAGTAAGCAAGTGCAATTAAA # Right flank : TAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 49554-50645 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIY01000023.1 Clostridium botulinum D/C strain 1274_DC contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 49554 36 97.2 30 T................................... ACAGCTTTTGGGATATTGCCATTGGTAAAA 49620 36 100.0 30 .................................... TTAGCAGAAACTATACTAATGAACATATGT 49686 36 100.0 30 .................................... AATAGGAAAGCTCCACTGGCGGAGTTAGGA 49752 36 100.0 30 .................................... AGCAAAACAGTTATTATTGCATGGAGAAGA 49818 36 100.0 30 .................................... AGTACTAAAGATGCTAAATCAAGAATAAGG 49884 36 100.0 30 .................................... ATTGTAGCAGATAGTGCTGAACCTAGAACA 49950 36 100.0 30 .................................... AGCTACAAAATAGGGTGTACCAAAAGGGGT 50016 36 100.0 30 .................................... GTTCTTATAGGAGATTCTTCAGCACTATAT 50082 36 100.0 30 .................................... GTAAAGATGGGTTTAGAAATGAGTGTAAAT 50148 36 100.0 30 .................................... TATTACATTAAAGCAACTGCAACTGTTACA 50214 36 100.0 30 .................................... TCATAGCAAACAGAATATACATCCTTAGTA 50280 36 100.0 30 .................................... CTAACTTATGTGCTAGAATTTATACAAATA 50346 36 100.0 30 .................................... AAGGTTATTGAAATTGAAAGTGAATCATTC 50412 36 100.0 30 .................................... AAGAAAATACATAAAGAGTTGAATTTAGAT 50478 36 100.0 30 .................................... TGCTTCTTTAGATAAGCTTCCTCTATTTCT 50544 36 100.0 30 .................................... GAAAGGATTGGAGACCTGGAAGGCAAATAA 50610 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : TTCCTTGTTTTTAAAAAAAGTATTATACATTTTAAATTCTTCTTTTAATGAAGCATCCATAACCTTTAATTCTCTCATAATTACAGTTGCTCTATCAGTAGAAAATTCCTCACTATAACAAAAAATATCATAGAGCCAATCTTCAGAAGGTATTGGCTTTTCCATATTTGAATACACAAGTATATTACTTATTGTATCTTCTTTTTCTATATGATATTTAGCCCAAAAAGCATTTTTATCTGTTAACTTAATAATTTTAACATTTTCTATATCAAACTCATCTATATCTTGAGCGAAATCTTCATTACTGTCATACCAAAAAACAATATGACGCTTCTTTCCATCACCTAATGGCTTTGAAAATATCTGTTTAAGAAAATTTGTTATTTCATGTAGATTCATTAAATCACCTCTTACTTAATATGTACTATTATAACAAAAAAACAACTACTTGTTATAATAACACCCTATTAGCTATTTATTATTTTTAAATTATATTT # Right flank : TATTAGTCATGAAAGCCGTTGGAATACAGTGATTTTAACGGCTTTCATGACTTTAAAAAACATTTAATTGACTTGAATTTATATTCTTTTCTTCCGGTTTTGGTGATCCTACTAAAAACTTCATTTCACAATATTGCTTTTCAGTAATTTGTAAATATCTAACCGAACCTTTAGGTGGTAAATTTCTTTTCAATCTTATAATATGTTTATTAGCTCCATCAATTCCATTACATATCCTCGAATACACTGAATACTGAATCATTATATATCCATCATTTAATAAGAATCTTCTAAAATTCTGATACTCTTTTCTATCTTCTTTTTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATCTTCTACTCATAATAATGATACTCTAATGGTTTTATTATAGGCAATTTTAATAGTCGGAAATCTTTTTTACTACATGCTGTTGTATATGAAGATATCATTTTATCAATTGCATTTAAAATAGAATGACTTTTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 947-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIY01000048.1 Clostridium botulinum D/C strain 1274_DC contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 946 36 100.0 33 .................................... ATGAAAATGAATCATTAGAAATATTTTTAAAAA 877 36 100.0 39 .................................... ACTTACAATATTTGAAATCCATTGAAATCCATCTATAAC 802 36 100.0 35 .................................... AGTATCCCAAATTTCCATAGGCATACCTTTTCTAA 731 36 100.0 36 .................................... TCTATATCCTTTTTCTTATTATCAATATCATCCTCT 659 36 100.0 36 .................................... CTTGTATATTTCTTTTGATCCCAAAGGGGCTTTCTT 587 36 100.0 35 .................................... TTATATAATAAATCTAACAATAATTTCATTCGTGG 516 36 100.0 37 .................................... TTACTTGTCACAATAAAGTGCATCCGGAGAAATTAAA 443 36 100.0 36 .................................... AAATTAAAAGATAAATTATCAAGGCCCTCAGATAAA 371 36 100.0 35 .................................... TAAATAATGCTTGATTAAGCATTTTCTTGATTTGA 300 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 100.0 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : CATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGCG # Right flank : CCTTTTAGAGGGCGGAATGACCTATATACCAACGGGTGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATATAAGAATTAGATTTATGTATAATACTATAATTACAAACATTTAAACTGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAAGTTAGAGGATCTTCATAAATTAAATTTAATTATGGAGGAAAATAGGAATTGGTGCCAGGCACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 21493-21979 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIY01000073.1 Clostridium botulinum D/C strain 1274_DC contig_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 21493 29 100.0 37 ............................. TCAATCGCTTATATATCAACGTATTACCCCCTATAAA 21559 29 100.0 35 ............................. GGCTCTAACAATTGCGTCATTGCAGTATATCCAGC 21623 29 100.0 36 ............................. GAGTAAAGAAAACTGTCGATGGTACTAAAGAACAAA 21688 29 100.0 37 ............................. CTTAATGTAACACACTTAATATTTAAATCTTTGGCTA 21754 29 100.0 35 ............................. CCTTTTCATCCTAATTGCAGAAGTACAACAGTAGC 21818 29 100.0 39 ............................. AATGTATTAGATAATTTTCCTTCACCTTTTTCAAATTCG 21886 29 100.0 37 ............................. ATAACAAATATTAGACTTTAAAGGTTTTTAACTTTTG 21952 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 99.6 37 GTATTAATCAAACTATATTAGTTATAAAT # Left flank : CAGATACTATGCCTAAAGTTGTTATATTGGGAGAATATAAATGGGGAAATAACGTATTTCAAGGATTAATAAATAAAGATGGAGTAAATATAGAGGGGCTTAAAGAAGTATTAGAAGAATATAACCATTGGAGAAATAGTAAAATATGGATAGGTGTTAGTAATAGAATATTAAATGAAGAATTTGAAACTGTAAAAGAAGATCTTGAAAAAGAATTTGGAAATTATGATGATATTGTAATAGGAAGTGTTAAAAACGCTTTTGATGGATATTTAGAATACTTAAAAGAAACTATGAAATAAGACTATATAATTTTGCAGTGAACCTCAGGTAATGTTTTTGGTAATTTTTTTAAATTTTATTGTAACCTAGTTGTATCAACGATTAGAGCAATTTATTGCAAAGAATCGTTCACTGCAAAATTGCAGGATTTATGTAGAATTTTTAGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGAG # Right flank : TTTACAATTTATAAATTTATAAAAAGAAAGGTAATAAAGTATATGAATGACTTAAATAATAAATTAAAACAATATAAAGCAAAATCGGATGACACTACTATATTTAAACACAATAAAGATTTACTTGTGGCTTTAGAACAAGTATTAAATATACATAAAATATCAGAAGAATTGAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTCACTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATGAAGATACTTTAAATGAAGTAAAAAATAAATTGAATATAGAAGTGGAAGATATAACATCATACTTAAAGAAAATATGTAGGGGTGGTAGAGAAAATCATAAAAAACTACATGACAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATCAAACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 24231-25421 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIY01000073.1 Clostridium botulinum D/C strain 1274_DC contig_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 24231 29 100.0 36 ............................. GAAGATATATGATGTATTAAAACCGGCTATAGCTAA 24296 29 100.0 37 ............................. ACGAAGTTAAAGCTTTAGAAAAAGAGATTGTATCTTA 24362 29 100.0 38 ............................. TAGATTATTAGAATTTCTAATGTTAGATTTATTGTTTT 24429 29 100.0 36 ............................. TTCGTCATTTCCCTTTGATACTTGCATAGGTACAAA 24494 29 100.0 36 ............................. GTATCACCGACTAACAAGGATTTAGAAACGGCAAAG 24559 29 100.0 36 ............................. GCCGATTGGATTATTGAAGGTAAATCATCCTTAATC 24624 29 100.0 37 ............................. GTATTGTTGTCTTTTAAATATTTCATCATTTCTTCTA 24690 29 100.0 37 ............................. GCGTTATATTTATCGTAGCTGCCTATAAATTTTTTAT 24756 29 100.0 35 ............................. ATGTTTTTTAATGCTATAAGATAAGAGGTGCTTAA 24820 29 100.0 37 ............................. GATTTGTTCTAGGTAGTAATGCAGATGAATGTATTAC 24886 29 100.0 37 ............................. GATAATTACCTTCCACGAAAAATCGAACTCTTAGGCA 24952 29 100.0 37 ............................. TCCTTACGTGTTTCCTTCATGGTAGCTCTATATAAAT 25018 29 100.0 37 ............................. AGCTCAACAAGAAAAAGTATCTAGCATGAATGAATTA 25084 29 100.0 36 ............................. GATGGAAGAGATTTATTCAAGAAAGATATAATTAAA 25149 29 100.0 37 ............................. TATCAAGTATTTTAAAATCTAATGTACTATACTTTCC 25215 29 100.0 36 ............................. AGGAACAAGACAAGTTGCTTCACAGTACTAAATAAA 25280 29 100.0 36 ............................. CTTGTTTTTTGCAACTTATCTTCAGACTTATCATTA 25345 29 96.6 20 ............................G AAAAAAATAGGTAATGGTAT Deletion [25394] 25394 28 82.8 0 ........TT......T....-......A | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 98.9 36 GTATTAATAAAACTATATTAGTTATAAAC # Left flank : TATAATGAATATAAGGGACAAATACAGTTTATAATTGACAGCATTAGAGTGGGGTATTACAATCAAAATGCTTCAGAAGAAATGTTAAGTGATAACAATACAGTACAAGTATTGCCAAATAGTTTATTAAGTAAATTTGCTGAATTAAGAGAAGAAAAAAGATATGTAGAGGCTAATGAATTATTCGTAAATGCCAAAAAATATATAGCTAAATATGATAATAACTTTAAAATTTATACAACAGATTATGTTTATGATTTTAAGGGATTAATCATAGGAGAGATGGATATAAATAATCAAATGTTATAACAATTTTGCAGTAAACCTCTGGTAGTGTTTTGGGCAAATTTTTAAAATTATATTATAACGTAGTTATATCAATGGTTATAGAGATTTAATATGAAAAATCGCTTACTGCAAAACTTAATGGTTTTGTATTTAAAGTAGGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGGG # Right flank : ATCTGAATAAAGTTTATATAAATTGTCAAATATATAAGTATTCGGTTTCATTAGTTTGAAATAAAAAAAATTTTTAATGAAAGGAATACTTATGGATTTTAATTTAGAAAAATTTAAAACACAAGGTATTAAAGTAAACTATTATTATGTATGTAAAAGAAAACTTTGGTTGTTTTCAAAAGGAATAGCTTTAGAATCTAGTAATGATAGAGTAATGAGTGGTAAAATTATTCATGAAAACTCTTATAATAGGAAAAAGAATAAGGAAGTTTTGATAGATAATCTATTAAGATTAGATATTATGGACAAGGATTATGTAAGAGAAGTAAAGATAACAAGTAAAATGCCATTACCTGATAGAATGCAACTTCTATATTATCTTTTTTATTTAAAAAATATGGGTATAAATAAAAAAGGATCTATTAATTATGTAAAAGAAAAACAGACAGAAGAAATAGAACTAACCGATTCTATGGAAGAAAAAATTAAAAATACATTAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAAAACTATATTAGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //