Array 1 26505-26248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027842.1 [Pseudopropionibacterium] massiliense strain Marseille-P6184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 26504 37 97.3 34 ...A................................. AGTTCAGCGAGTTGAAACTGGCCTTTGCCTCCGC 26433 37 100.0 37 ..................................... AAAAATCCGACCTTCATCAGATTGGAATTTAAAAGAA 26359 37 100.0 38 ..................................... GACGTGCATGTTCTCCAACCAGACGAAAATTGGTATGG 26284 37 97.3 0 ........................G............ | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.7 37 GTCTGCAACCACCGCGAACCTTAGAGCGGATTGAAAC # Left flank : GGTGGTGGAGTGCGCCGGGACCCGCGCGATCATCATCAATGCGCCCGGCTCCGAGGGCGGCGCCTCCGACACCATCGAGGTCGCCGGCCCGCTGCTGCAGCACCTCGTCGAACAGCTCGACGGCGCCGATCACTGAGCAGGGAAACCTCGTGAAATCGGTTGAGCCGGGCCGCGACGTAAACCTTCCCGAAACTGGTTGAGCCGGGCCGCGGCGAAGGAGCAGCCCGTGTCGAAACCACCCCGGCGGCCAAACGACCACCCCAGCCCCCTCGATCACCCGAGGTAGACTCCGACGAAGATGCTCAACCCCCCGTAACTGGGCATCTTAGAGACACCCCCGGACAGGAGTGTTGGAGAGCCACCGAAAACAGCCTCAAGTGTGTATGACACCTGACAAGGGGTTTCAGACAGGTTCTGTCCGCTACTTGGAAGGGACGGAAGGGTGTGGTGTGTAAGAACACCACAACAGGGCTTGTCAGGACAGCGCGTCAGAGGGTAGG # Right flank : CAGAGCCACCACCGTTTCGGTGTACTTGTTTCGGTGGTTCGGGATCGCCCAAGTCCGGAGGCTTGTTCACAGTCATCCTCAACCGCACCCTGGCCAGGGTTTCACCGACCGTGGCGCCGTCTGTGAATAAGCCTCCTTGCCACCACCGCGGCTTTGGGCGTTGAACATTGTGAGGAATCCGGCTTCCTCGCTCCCCGCTTCCCCTCCCGAGACTTTGCTGACCTTATCGCTGTTTTGCTGGCTCTAATCCTGTTTTGCTGGCCTTGTTCACGTTTGCTGGCCTCACAGCGCAGGCAAACGTGAACAAGGCCAGCAAAACATCGGTAAGGCCAGCAAACCACTGGCGCGGGTTCAACTAAGCCCAGCCCGCACCCTGTGAATAAGCCTCTATACGACACGCCGATGTTTCTCGGCGGTGAACGTCACGGTTCCACCACGAGTTCATCGACGGCACCGCGGCGAATGGTTTCTGCACGGGCGAAACATTCGGCGAGTGCGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCAACCACCGCGAACCTTAGAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : NA // Array 2 279623-286368 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027842.1 [Pseudopropionibacterium] massiliense strain Marseille-P6184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 279623 29 96.6 32 ............................T ATCGTGGTGACTCAGGGCTGTGGTGTGGTCAC 279684 29 96.6 32 ............................A GTCTCCACGATTGTCGGGTAGTCGGTTTGTGG 279745 29 96.6 32 ............................G TCGATCATATAAAAGGATCAATTGCATTAAAG 279806 29 100.0 33 ............................. AGCGCCCTGAATGCGTGGCTCCTCCCGATTATG 279868 29 96.6 32 ............................G TGGGGCGTATGTACGAGACGTCACCCCGGTGG 279929 29 96.6 32 ............................A TCATACAATGTCATCGTTGGGTTTGCTTTACG 279990 29 96.6 32 ............................T AGAGGGTCCAGGCCGAGATTGTTCGCGAGGAC 280051 29 100.0 32 ............................. AGGGGCGGGTAGCGGTACCAAGTCCCGGACGC 280112 29 96.6 32 ............................G GACCCCCCCCATCAGTTCCCATGGGGGCAGCG 280173 29 96.6 32 ............................G CTTGTCCCATGTGGCACGGAACCGCGCGGGGG 280234 29 96.6 32 ............................G AAGATCGCGCCACCAACCTTCGGGGTGCCAAC 280295 29 96.6 32 ............................G CATCCGCTTCCAGTGGCGGATCCCCCAGCTCC 280356 29 96.6 32 ............................G GACCGCGGCCTGTGGTTCAAAGCCCAGCTGGA 280417 29 96.6 32 ............................G CTGCCGCGAGTCGTGGCGGGAGATCGAAAGTG 280478 29 96.6 34 ............................G GACCCCCCCCCATCAGTTCCCATGGGGGCAGCGG 280541 29 96.6 32 ............................G GTGTTCCTTTCCGGTTTGGTTCGACTGTGGGG 280602 29 96.6 32 ............................G TGGATGCCACCGCGGGGGGTGTGGCGGATGGC 280663 29 96.6 32 ............................G AAACGCATCGTGACCTGCGCCTTGTGGGGCGT 280724 29 100.0 32 ............................. CAGCGGGCGGTTTCCGCGAGGGCGGGGATGAA 280785 29 100.0 32 ............................. CGCTGCGTACCCACCAGAAAGAGCCGCACCAG 280846 29 100.0 32 ............................. ATCGAGTGCCCTACCCGTACCGTGTTCGTCAC 280907 29 100.0 32 ............................. GCCCTACTACGGGCTTGGGAGGCCGCGGAACA 280968 29 100.0 32 ............................. CGCGCAGCAGAATCTCCGAGTGGCGCGGTGGC 281029 29 96.6 32 ............................G AACGCCAGAACGTTGTTCCACAGCGCTTCCCA 281090 29 96.6 32 ............................G TCGCGCACCCACGACGGGAGTTCCAAGTTCAG 281151 29 96.6 32 ............................G CCCTTCGGAAGGCGCTACGTGGCGGCACGGTT 281212 29 96.6 32 ............................G GATGATCGTCAACGGTTCCAGAGCGGCGACCG 281273 29 100.0 33 ............................. CACCCCCGACCCGTTCTTGGGGACAGCCGACTG 281335 29 96.6 32 ............................G TAGTCGCGCCCCGACGCGACCCGGGCGACCCG 281396 29 96.6 32 ............................T GTCACCAGCTCCGCCGACGTGTAGGCGTCAAG 281457 29 100.0 32 ............................. ATCCAAAACCCGGGTCGGACTTCGACCAGAGC 281518 29 96.6 33 ............................G GACGCGAACGCGGGGTTCTTCCATGTCACCTCC 281580 29 96.6 33 ............................G GCGCTACGTGGCGGCACGGTTTCGGATGCCCCC 281642 29 100.0 32 ............................. TACACGGAGGCCAACATCATGGCCGGCGTTGA 281703 29 100.0 32 ............................. GCCCATGGCCCGGCCGTCCAGTCCAGCACTTT 281764 29 96.6 32 ............................T CCGCCCAAGAGGGTGGCGGCGAGCTGGGTGAT 281825 29 100.0 32 ............................. TGCGAAGGAAACACAACCAGGCAGAAGCGAGG 281886 29 96.6 32 ............................G GGAAAACATCATGACCTACACCACACACCCGC 281947 29 96.6 33 ............................G GTTACCGTTTCGCAAGCCACTTGGTGGATGTTT 282009 29 100.0 32 ............................. TTCCGGCCGTCACCCGCCGTGGCGGCGGACTG 282070 29 100.0 32 ............................. TCGACGTGCCTCGGGACGAGTTCGTCCCCGCG 282131 29 100.0 31 ............................. TCTCAGTCGCCTACGCAGGAGACTTGCCATG 282191 29 96.6 32 ............................G TGATGGCGTTGCCGGTGAGCGGGTTGATGCGA 282252 29 100.0 32 ............................. GCCCTACTACGGGCTTGGGAGGCCGCGGAACA 282313 29 96.6 32 ............................G GTCGCCGAGCTGATCAAGGCAGGGGAGATCGA 282374 29 100.0 32 ............................. CGTGCCACTGCGCTGCCGCATCGAGGCACCCA 282435 29 96.6 32 ............................G GTCGCCGACGAGGTCTACATCAGCCGCTACCT 282496 29 96.6 32 ............................T CCCGACGGCCGGATCACGCTGACATCGGCTGC 282557 29 96.6 32 ............................T ATTGTGGTCACTCAGGGCTGCGGTGTGGTGAC 282618 29 100.0 32 ............................. CGGATCACCACGATGGTCGATAAGCGGAGGAT 282679 29 96.6 32 ............................G TGTGGAGCCGTCCGATGAGGCTGTAGAGCACG 282740 29 100.0 32 ............................. AACACAAACAAAGACTCCCATTCAACTCAAAC 282801 29 96.6 32 ............................T GGGGCAAGTGCATCAACGAACACCCCAAAACC 282862 29 96.6 33 ............................G TTAGTTGTTGACCGAACTGCTTCAATCTCTGCC 282924 29 100.0 32 ............................. CACGGTATCGAACCGTTTGACAAAACTATCAG 282985 29 100.0 32 ............................. TATTCCACTGTCATCAACTATTCGCACGGTAG 283046 29 100.0 32 ............................. CGGGCTCTGGAGGCTCTGGAACCGCTCGGATC 283107 29 96.6 32 ............................T CTGGGATCCCTCGATGTGACGACCGATACCCG 283168 29 96.6 32 ............................T TGGGATGTATTCACTGATGCTGCGATGCTGGC 283229 29 96.6 32 ............................G TGCGGCCATCCGCCGTTTTTGCGACCGCATCA 283290 29 96.6 32 ............................T CGCACCGGTCACAGCCTGATCAGGGCGACCAG 283351 29 96.6 32 ............................G ACCGGCGGCCAGCAGGCCAATAGCGGCCACGA 283412 29 96.6 32 ............................T ATGCCTCAAGTGCATCTTTCGGGCATTAGCCA 283473 29 100.0 32 ............................. GCCCCTCGATAGCAGACAATTATGTCCGGAGT 283534 29 100.0 32 ............................. CTCCACAGCCGAAGGGGAGGTAGACATCTACG 283595 29 96.6 32 ............................G ACACCCAATCGTCTGCACCACACGGTCCACAG 283656 29 96.6 32 ............................T GACCAGCAGGTCACCGCGCAGTTCTACATCCC 283717 29 96.6 32 ............................T CTTCCGGGCAGTCGATCCGTACAGCCAGTACG 283778 29 100.0 32 ............................. GTCATAGTCAAGGCGGCGAACTCCGCTGATGA 283839 29 100.0 32 ............................. CAGTGGGAGAATCCAAGGCCATGACGGAAGAC 283900 29 100.0 32 ............................. CCCGCCTGCTGGCCGCCGGGTTTCCTTCCCCG 283961 29 100.0 32 ............................. GTTGTCATTCCCCGGGCGCCTCAGTGGCGGGA 284022 29 96.6 32 ............................T CAACAGCCGTCACGCAAGCCTCGAAACGGACC 284083 29 100.0 32 ............................. ATCACGCCCCCTGGGAGGGTTTGATGCGGCGG 284144 29 100.0 32 ............................. CACCGTCCGGCTGGACCAAGTCGGCAGTGAGG 284205 29 96.6 32 ............................A TGTGCTCCGGAGGGTAGACAGCATGGCTGTGG 284266 29 96.6 32 ............................G TACTCGAAAATTGGCTCCACCGTTGCCGATCT 284327 29 96.6 32 ............................G GCACGTCGGGGATTGAGGCCAAGAAAAAAATC 284388 29 96.6 32 ............................T TCGGCCTGTGCCCCTCAGAAGCCTCAGAATCG 284449 29 100.0 32 ............................. CGCGCAGTTTCGACTGCGCGGTTTTTCATGTA 284510 29 96.6 32 ............................T CCGTCGACAATACTCTGCCAGAGTTCTCCCAG 284571 29 96.6 32 ............................T ATATGTGCGCCACACCGAGTTATCGACGATAC 284632 29 96.6 33 ............................G TCGCGTATCCGAGCTATCTCAGAGCGGAACCTA 284694 29 96.6 32 ............................A GCGCCGGGAAAAAGTAGCTCCGGAGCCGATGG 284755 29 96.6 32 ............................T TGTGGCGACTGTTCACGATAGTGTCCTATTGG 284816 29 96.6 32 ............................G CCACAGCACCCGGCACAGTGTCATACCCATGT 284877 29 96.6 32 ............................G GACCTCGAGGCCGCCGACCAGTCGGTGATCGA 284938 29 96.6 32 ............................A GCCGCGGAGCAGGCCGAGGAACACGCGGCGAA 284999 29 96.6 32 ............................G CCGGCGCGGTTCCACTGGATACGCATGGCCTG 285060 29 100.0 32 ............................. CTCGGCTACGTGTCCAAGGACGGCTTGTCGTG 285121 29 100.0 32 ............................. TTCGCGGATGACGAGGATGAGGCGTGGCCTCA 285182 29 100.0 32 ............................. ACCCGGACGGAGAGCTGACACGAAAGGCCCTC 285243 29 100.0 32 ............................. CGCCCCAAGGTGCTGTTCGCGGACGCCGTGTC 285304 29 96.6 32 ............................G GCGTGGACGTTTCGGAGCCAACAATAGGTCAA 285365 29 100.0 32 ............................. ACCTCCTGACAAACAACAGCAACAAGAACAAA 285426 29 96.6 32 ............................T TTGAGGATGAAACCATGATCTCTTCCGAAGGG 285487 29 96.6 32 ............................G ATCCCGGAGATCGTGGAGCTGATCCAGTCCCA 285548 29 96.6 32 ............................G TGGTGCTGTCCGGTTTGGACGGGTCGAAGCTG 285609 29 96.6 32 ............................T GTCCCTCGGATCAATACCCACTCGTAACTCCT 285670 29 100.0 32 ............................. TGGGACACCGTGGTGCAGTGGCTCAATGGGGT 285731 29 100.0 32 ............................. ACCCCTGGCTCTGGCTCAGCCACCATGCCTCT 285792 29 100.0 32 ............................. TGCGCGGTTTTTCCGGGTAGCACCTACTCCCT 285853 29 96.6 32 ............................G GGCGACACCGGACCTGCGGGCCCTGCCGGTGA 285914 29 96.6 32 ............................G GAGATGAGATCGTAGGCCGTCATTCTGAGCCC 285975 29 96.6 32 ............................A GCGTATATTCTTGTGCAGGAGGTTCTCTAATG 286036 29 96.6 32 ............................T TCTGCTGTATTCTGGGGGTATGGGTAAGACAA 286097 29 100.0 32 ............................. TCGTAAGTGGGTGTCGGAGGCATTGGGTAAGG 286158 29 100.0 32 ............................. GTCCAACCCTCGCGGACCGCAGACGCTCCGCA 286219 29 96.6 32 ............................T GCGTCCGACTCGATACGTCGGACGTGGACGCG 286280 29 96.6 32 ............................T CGCCACCCGGGCCCTCGAGCGCCTCCGCCAAG 286341 28 93.1 0 ........................-...T | ========== ====== ====== ====== ============================= ================================== ================== 111 29 97.8 32 GTATTCCCCGCGAGAGCGGGGATGATCCC # Left flank : TGATCGTCGATGACCTGCATCTCTGGGACGATCTTCTGGGAACGGTCGCGGCCGGTGTCTCCTATGCCGAGTGGTGAGCGCTGATGGTGGTTCTGGTTCTATCGGCTGTGCCGGAGGGGCTGCGCGGTCACGTGACCAGGTGGTTGCTGCAGATCTCGCCGGGTGTGTTCGTGGGTAACCTCAGCGCGCGGGTTCGGGAGAGGCTGTGGCAGATCGTCACCGAGACAATGGGAACTGGGCGGGCAATCATGGTGTTCCGCGCCAGGAACGAGCAAGGCATGTCCTTCCTGACATGGGGCGATCCATGGGTACCGGCTGACTACGAGGGGCTCACTCTGATGGTCCGCCCAGGCCCAGCAACCGATGAGCCAGACGACTCGCCGCGTCAGGATGGCGGCCGTCGTCGACGTGGGACGAGCGACTTCGAGAAGCGGAGACGTGCGAGGAGGGGGTTCCCAAGATCTGACAGATCGAGCTGATAAAATCCCTTGTCAGCAAGT # Right flank : TCACAGTAGAATTCTGGGAAGGCCGCCATGTCCCGCATTCATCGCAAAAGGAGGACGACTCCTGTGAGGCTTATGTACAGACGGCGCACGGGCCAGTAAAATCCCTAGTCGGGAAATGTTTGAGAGCGGCTGTGAATAAGCCTCAACGAGCGGTCAAACGGCGGTAAGGGTTGCGGGATTTATGATATCCGATATTGTTCTCTGTAAGTGCGGTCAGTCTGACAGAGACTGGCCGGTGGTTCTAAAAGGAGTGTCCGGTGTCCGGATCCCTCGTTATTCAGCCCACGACCGTTCGGTGGCGGCTGGAACCCACCGCCCCCTTCCGCTTCGAGGACGGCATTCTCGCCGCTCACGGGCTCCGGGGGCGCATCCTCGGCACCAAGAAGGAGAACACGGACCTGCGTGAGCAGGGCAGCGGGGTCGAGGCGCTGGCCGGGCACCACGACTCCTTCGGTGACGGTCCCCAGCACCGGCATCCCCACTGGCTCTGGCTGCCGACA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGAGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 415797-416047 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027842.1 [Pseudopropionibacterium] massiliense strain Marseille-P6184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 415797 36 97.2 38 .....G.............................. CTGCTGCCAAGTTTCTCAGTGCACGTTCTTTTCCCTGT 415871 36 97.2 33 ........T........................... CGTCCACCAGGAAGGCAATACTGATAATCAGCA 415940 36 100.0 36 .................................... CTATTCCATTCCCGTCATCCATGCCGTAACATGGGT 416012 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 98.6 36 GTCTGAAACCACCGCGAACCTTAAAGCGGATTGAAA # Left flank : GCGACGGATGCTTTTTTAAGTTGGTTGAGCCGGGCCGCGACGAAGGAGTGGCCCGTGTCGAAACCATTTCTCCTGAAGCAGATCGGCCCAGCCCGTGATCAAGGTTCCTCAAAGCTGGTTGAGTCAGCTCGTGGTGAAAGTTTTTGAAGCTGGTTGAGCCAGCTCGTGAGCGCTAGCGAACGGCTGTGTCGAAACCACTACCGGCGGCCGAACAGCAAACCCGACCGCGCCCTGGGCCGGATCCCGCGCCTCGGGACGGGACCCGGCCCGAGGTAGACTCCGACGAAGACGCCCAGCTCCCTGCGACCGGGCATCTTGGAGACACCCTCAGGCAGGGGTGTTGGAGAACGACCAAAAACAGCCTCAGGTGTGTATGGCACTTGACTAGGGATTTTACCCCATTTAGGACAGATTCTGTCCCCTGGTTGGAGGGGGTGAGGAGGGGTGGTGTGTAAAACCGCCGCAACAGGGCTTGTCAGGACAGCGTGCCAGGGGGTAGG # Right flank : AAACTGGATTGAGTCAGTTTGGTGAGCTGTTCCCATGAGGAATCGTTGAGAACTTCGATGGGTTGTTTTCGTCGTATTCGACCTCTTCTTGCGCAGGGCGAGTTGGGGATTTAGTGCATGACGTGGAGGGGAAAATAATGACTACTGACAACCTTCTTCTCGATGAGGAGAAGGTGGTGGAGTGTTTCACCCTGCCCGCGCTTCGTTGCGCCTGGGAGAGGGTGTTGAAGAAGGACGCCCAGGACGGCGACATCTCCGATTCGGTGGAGCGGTTCGCCGAGGGGGTTCAGGAAAGACTGGAGGAGCTCGCCGAGGAGCTCCGGGCGGGGGCGTACCGGCCCTCGGACCTGAGCCGGGTGGTGATCCCGAAGAAGAACGGGGAACGTTTCCTCGACATCCCCTCGGTGCGGGACCGGATAGTGGAACGGGCGATCCTGGAACACATCAACCCGGCCATCGACCCGCTCCTCGGGGCAACCGCGTTCGGTTACCGCCCCGGA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAACCACCGCGAACCTTAAAGCGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 4 418366-418619 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027842.1 [Pseudopropionibacterium] massiliense strain Marseille-P6184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 418366 35 100.0 39 ................................... CGAACCGGTCCCGCCACCGATCGAGGTAAGTGATGATGT 418440 35 100.0 35 ................................... TAGGAGCGCAGGAGCTCCCATGTTAGTCCCATCGT 418510 35 100.0 40 ................................... TCGTTCCGGCCGGTGGCCGCGTTTTCCGCAGCTTGCGGGT 418585 35 94.3 0 ...................T........A...... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 98.6 38 CTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC # Left flank : CGGCATCACCCCGGAGGAGCTGGTGGAGATCCAGAGCCGGGCAGCCGGCATCATCGACGAGAACACGGACTCGCTGTGGATCGTGAGACAGTGCGCGGCCTGCTGGGAGGAAGCCCGGACCCTGGGTCAGGCCCACCCACCGGCCCGGGTGCTGCACTACACGGTGATGTGAAGAATCCTGCCGGATCCGGATCCGCCGACACCTGGCAGGACGGGCCGGGAGGCGGCATGAGGGTAGGGTTGAAAGAAGCCGGCAATCCCGGCTGCCCGCAGCCGGGGGTTTTGGAGACACCCTCGGACAGGGGTGGTTGGAGAACGGCCAAAAACAGCCTCAGGTGTGTATGCCACTTGACTAGGGGTTTTACCCCATTTAGGACAGGTTCTGTCCGCTTGTTGGAGGGGGTGAGGAGGGGTGGTGTGTAAAACCGCCGCAACAGGGCTTGTCAGGACGGCGTGCCAAGGGGTAGGGCTTGTCAGGACGGCGTGCCAAGGGGTAGGGC # Right flank : CGCCAGAACGAGGGCTCCCCTCTCTCTGTGAAAGAGAGGTCTGGAAGCACCGCGAACCCCGAAATGGATCAAGGCCCCTTCGGTTTCCATTCGCCCAGCCAATCACTCGTGGACGAGGCCAGGCATGTGCCGCACGGACCTCCGCTGGTGGCCCGCACGATCTGAAGGACCTCGCGGACATCACGGGAATACGTGCACAGTTTCATCCTGTGCCGGTCGATCGCCGCCACCGCGATAGTGGCCCATCCGGGTGCCAGGCACGGGCCGGGTGCTGGCTCGACCGGTTTCGGGGAGGTGGTTGGGGTGGGGGGTCCGGGGTTTTTGGGGGCGGGGTTTGTCGATCGGGTGTCAGGGATGGTTTCGACTCGGACTGCTCCTTCGTCGCGGTCCGGCCCAACCGGCTTCACCCTCCCCGAAGTGGAACCGTGGTGCCCGTCCCCGGCGTCTCTCAGATGCCGTCGATGATGGCGTTGAAGGTGGGTGAGGGGCGCATCACCGCC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 2092979-2092724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027842.1 [Pseudopropionibacterium] massiliense strain Marseille-P6184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2092978 36 100.0 33 .................................... CCGGAACCAGGGTCTCGGCCAACGTGGTCACCT 2092909 36 100.0 41 .................................... GGTTCTCCGACCCCGAAGAGCGGTGCACTCAACGACGATGC 2092832 36 100.0 37 .................................... GCCTTCGTGGCAGGTTCCAACTTCACGCCGGCCGCGG 2092759 36 94.4 0 ..................................GA | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 98.6 37 ATTGTTCCGGTCTTCCAGACCGGACTTCATTGAGAC # Left flank : CCGGATCTCCACCACTTGACACCAAGGTCCCCTATGGCGCCGCCGTTTACTACGAGAAGTATGTGTGCGCTTCCGAGGAGAACGGACTGACCTGCTGGAACACCGAAACCGGCCACGGCGCCTTCATGAATCGTGACGGGGTCACCACTTTCTGACCCGAGCCACCGCGCAGCCGACGGGCGCCACGACAGATCGAAGGAGGACCCTCCCCGACCCCTGTGCGGCATCCGCGCGGGGGAAGGCTACCGGGATGGTTCCGCCCCGACGGGCGCCGTTATGCTTGGGGGTGCCGGGTAGGTTGCCCGACGAGGGGTCCGTGGTGGTGTGAGCCGCTGCGAGACCTCCGGTCGTGTCGTCTCCCCTAGGGAGCGCTCGCAGGGGTTTGACTAGGTGTTTTACTCCCTGACAACTCAAGAGTGGTGTGTTGTGGAGCCCCGCGAGGCGGAGCGCTCGCAGGGGCTGGTAAAGTTCCTTGTCAGGACCGCCTTCCGAGGCGAGCC # Right flank : TTATTCACAGGGTGCGGGCTGGGTCGAGTTGGCCCCGCTTCAGTGGTTTGCTGGCCTTGCCAATGTTTTGCTGGGCTTGTTCACGTTTGCCTGTGCTGTGAGGCCAGCAAACGTGAACAAGCCCAGCAAAACAGGATTAGAGCCAGCAAAACAGCGATAAGGAGGCTTATTCACAGGCGGGGCGCCGGCCAGCGGAGTTCTCTGGTGGTCGTGTCCTGGAATCGCGGCGGGCTCTGGTGGTTTTGACGCGAACTGCTCCTTCGTGGCGGTCCGGTTCAACCAGCTTCAGAAAGGCTGCGAATCAGTCTCGCTGAGACTATTGGACTGGTGATGTAAAACCCCCGCTCATCGGGTGTTGTTCCGGCCTTCCGAACCGGACTTCATTTAGGCTTATTCGCAGGCGACGTGTCGATCACTGAAGCTGCTGGTCAGAGCACGCTTGAGGATGACTGTAAATAAGCCTCATCGGTTCAGTGGTTTGCTGGCCTTCCGGTGTTCTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTTCCGGTCTTCCAGACCGGACTTCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.30,-12.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 6 2708689-2708510 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027842.1 [Pseudopropionibacterium] massiliense strain Marseille-P6184, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 2708688 35 100.0 38 ................................... CCGTTGACCTCCCATACGGACGGGTTGATGACGAGATG 2708615 35 100.0 36 ................................... ACTTGCAGGGAAAGATGACGAATACCTTGAGATGCG 2708544 35 97.1 0 ................................T.. | ========== ====== ====== ====== =================================== ====================================== ================== 3 35 99.0 38 TTGTTCCGGTCTTCCAGACCGGACTTCATTGAGAC # Left flank : GTTGATGAGGTTCTGCAAGCCGGTCTGCAACAGGCGTCGGAACGCTTCCTCGTGGGCGAGGCTCGGATTGTCGAGGAGTTCCTGCAGGCTTCTTTCTCAGGAGGCTTATTCACAGCCATCCTCAAGCGCGCTCCGACTAGGGGTTTCACTGGTCGACGCGCCGCCTGTGAATAAGCCTCCAGGTGTGATGAGTAAGCTTTTCTTCTCGTCTTCTGTGTGGCATCTGCGGGGGGAGGAGGGTGCCGGGGTGGTTCTGCCCGGACGGGTGTCGTTATGCTTGGGGGTGCCGGGTAGGTTGCTTGGCGAGGGGTCTGTGGTGGTGTGGGCTGTTGCGAGACCTCTGGTCGTGTCGTCTCCCCCGGGGAGCGCTCGCAGGGGTTTGACTAGGTGTTTTACCTCCTGACAACTCAACAGGGTGTTGTTGCGGAGCCCCGCGAGACGGAGCGCTCGCAGAGGCTGGTAAAGTTCCTTGTCAGGACCGCCTTCCGAGGCGAGCCGAC # Right flank : TAGAGAGTTACGGCGTCGCCGCATTGCGGATTGTGATGGCCGGTGCTCCGCCTGCGAACAAGCATCCAACTGCATAACTTTTTCGTAAGTCCTTGGCTTGATTGAGGCTTGTTCACAGGATGCTGGTTGAGCCAGCTCGTGAGCGCCAGCGAACGGCTGTGTCGAAACCACCCGGCGGCCGAGAAGCACACTCGGACCCCGGAGTCCTCGGACACCTATGGGGTGGTTTCGACTCGGACTGCTCCTTCGTCGCGGTCCGGCTCAACCAGCTTCGGAGAGGCCATGAACAAGCCTCATTATACTGAGCGATACCGTGATCGCGCTGGTATTTTCTTCAAAACGTGCTACGAAACGAGAAGAATCGGAGAGAATGAAGAGAATGAATTGCAAATCCTTAAGAGCATGAGAAATGATCTCTCTTATTTTGGTGAAGCTGATTTTATTAATGCTTATCGCGATCAAATGGAATCTCAATCTATGCGCAACTTTCTGAGTTGGCT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTTCCGGTCTTCCAGACCGGACTTCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //