Array 1 25308-24364 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHF01000006.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1595B Contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25307 29 100.0 32 ............................. CGTCGACCGTCGAGCCGACCCAAGTGTAGGGG 25246 29 100.0 32 ............................. GTCGCGCTCACCCCCTCAAACAGCAGTGACGA 25185 29 100.0 32 ............................. GTCATCACCCCGTTGGGGAGCTCGAACCGGCA 25124 29 100.0 32 ............................. CTGATCGAACAGCGACGCAAGGTCATGAACAT 25063 29 100.0 32 ............................. AACGATAACGACGAGATCGGTAATAATCCGCC 25002 29 100.0 32 ............................. GCCAAACTCCAGCAGGTCATCGACGACCCCGA 24941 29 100.0 32 ............................. ACCGGCAAGACCGCGCAGGCGCGCGCCACCGC 24880 29 100.0 32 ............................. GCATTGTACAGCTTGGCTTTTCCCGCCGCCGT 24819 29 100.0 32 ............................. CGCAGCAGACATTGTGGGAATCAGACTGCAAG 24758 29 100.0 32 ............................. ACGGCTGACCCCGACGGGTGGTCGCGGTTCGC 24697 29 96.6 32 ..........T.................. CGGCATGGCGAACGTGCTACGATACACCCTCA 24636 29 96.6 32 ............................A TATGCGACGAACGCGAGCCAGACCGATAGCGA 24575 29 100.0 32 ............................. AAAACCATCACCCCCAAGCAGGCGCTCGCCGA 24514 29 96.6 32 ............................A TTCACGCGCGTAGCGAGCTGCGTAAGCGCGGA 24453 29 100.0 32 ............................. TGTTGTGCCGCTCGGCCGCGTTGCTCGCCCGA 24392 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : CGGGGATGATCCGAAGATCCTCAACCTGAACATGAGTGCGTTGCTGTTTGCCCCGCATGTGCGGGGATGATCCTTTCACTTGGCTCATGGTCTTCTTGATGAAGTCGTTTGCCCCGCATGTGCGGGGATGATCCGCGCTCGCCGACGTGCGAGCGAACGGCAAGAACGCCAAACCAATGAGCCGTGCCATAAACTATGTCTTGAACAACCGAGAAAAGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGAGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACC # Right flank : TAGAGGTTGTCGCCGCTTAATTGTATCCACCTGTTTGCCCCGCGCCGTTGTCGCCGTTGTCTAAATGAAAGTGCAACACTGTTGTCAGGCTTGTAAGTGTAGCAGTTCGTCAATGAAGGCTTTGGCTGGTCCGGGTCAAAATGCACCTACCACTCTTATCGTCTGTTACCGCCTTCTGGGATGGCAGCAGTTTCTGTTTTTGCTACGGGTAGTGCTCTTTTCGCTACGGGTAGTGCTTTTCTGGCGCACTCGTCACTATGATCCGCCATATTTCAACGATTGTAGGTGGGAATTGCCCGAGGAACTACTACCCGTAGCGGGAGGGGCACTACCCGTAGCGAAGAAGGCACTACCCGTAGCGGCGGTGGTGCCACGGTCAACGCGAATTCGCTGTTTATGTCACCTACACGGTTGTTGGTGTCGATGTCCAGACATCAGCAGCCATAAGGGACGCGATTATTGGACTCCCGTGACTGACCTCAGCCATCAACTACCATCTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26068-25673 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHF01000006.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1595B Contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26067 29 100.0 32 ............................. GCGTTGAGAAGATACGCAACCGGTGTTCCTCC 26006 29 100.0 32 ............................. TGGGCGAATGAGCGCAGCCACGGCCAAACCAA 25945 29 100.0 32 ............................. ATACAGCTGACTGCAGCACCACGCACAGTGCG 25884 29 100.0 32 ............................. ATACAGCTGACTGCAGCACCACGCACAGTGCT 25823 29 100.0 32 ............................. AAGATCCTCAACCTGAACATGAGTGCGTTGCT 25762 29 96.6 32 ............................T TTCACTTGGCTCATGGTCTTCTTGATGAAGTC 25701 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GATAGAATCAAACCAACATCGAAGAGAAGGGAACTCCCATGCGTGAACGCATACTGAAAACCATCACCGCCACCACGTTGGCCGGGATCATGCTGGTCGCCGGCAGCGGGTGCGGTTCGAATCAACCCACTACCACTGCGACCTCGACACCAACCGTGGATGTCATCAAACAGATCGAGACTGATTGCGGCGTCCAGTCCGAACGCGGCAAAGAGCTCGTCTATCGATGGTGGAGCAATGAAGGTGAGAAGAACACCGCCCAATGCCTGCTCAACCACATGCCGCAAGACGTGTACGACCAATACGCACAAGGAGTTGGGGACGCGAGCGAGAAGTACATGGACGGCGGTAGCGCTACATATAGCGACTACACGAGCGAGGAAGGCTACCGCTACGAATGGACTGTGCACTACATAGGCGGCGGCACTGCGTTCAAGACATTCTCTATTCTCACCGTCACGAGAATCTAGTCGCATGTCATGCCGCGAAAACGCGAATGA # Right flank : CGCTCGCCGACGTGCGAGCGAACGGCAAGAACGCCAAACCAATGAGCCGTGCCATAAACTATGTCTTGAACAACCGAGAAAAGGCCCTACAACGAGTCTTACAACTCAACAACAGGGCAGTCAAGAAACACGCGAAAAGCACCATAAAGAAACGGACATAACAATGCACACGCCAATAGACCCACCAATGAAATGCAGGGAATACTACCCGCCAGTCGACAAAGAAATCGCCTCACTGCCGACGTGCGAACCCGGCGAAAAACCGGAGCCACTTCTAATCCCTGAATACCTGTTCGACACCGACGACGAGCAGACAGAACCACAGCCGGACAACACGGAACACGAGCCATACACAGACCACGACCGTTTGCCCCGCATGTGCGGGGATGATCCGCGTCGACCGTCGAGCCGACCCAAGTGTAGGGGGTTTGCCCCGCATGTGCGGGGATGATCCGGTCGCGCTCACCCCCTCAAACAGCAGTGACGAGTTTGCCCCGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27092-26575 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHF01000006.1 Bifidobacterium pseudolongum subsp. pseudolongum strain 1595B Contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27091 29 72.4 32 C.G..T..T...AT......AG....... CACGTCGTCGAGGATTGACGGATAGGTGACGG 27030 29 100.0 32 ............................. GTGAGCCGATGGGCATGCCACGACGAACCGCA 26969 29 96.6 32 ............................T CATCGTCTGCAACGGACGGTACACGTTCGCCG 26908 29 100.0 32 ............................. CTCATAGTTCGCGCGCCGGCGCTCATCCCACA 26847 29 100.0 32 ............................. AAGCGGGCCACCAACAGGTGAACCCGCCCCAA 26786 29 100.0 32 ............................. CTCATAGTTCGCGCGCCGGCGCTCATCCCACA 26725 29 100.0 32 ............................. CGACCCAAGCCGCCACCAGCGCCGGAACCAAC 26664 29 100.0 32 ............................. TTGGGGTAGCCCATCTCTTCGGTCACTTTCCG 26603 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTTTGCCCCGCATGTGCGGGGATGATCCG # Left flank : GCTCGGTGTCCAGCAAAGTGAGCGTTGATCCCTCAATCGCGTTGGAGTTGTATACGTAGCGGCTCAGCCAGTCGCGCCTGTGGTCATCGATGGCTGATTCCTCGATGCCGTCCTAGGGGAGTGTGGCTTCAAGTTCTTTTTTCGTGTTGTCGATGGTTGACAGCATTTGGCGGATACCATGTTCTTGCTTCAACCGGTCCAGCGTGAGGGGGAGGTCCTGGATGCGCTGCAGCAGTTGCGGGTTGGGTGTCATCGATCCCGCACGGGATGCATGTTCGGCCATGTAGTCTGTTCTCCGATTTGCTCATGCCGAATAAGTCGACATAGAGGTGATAAGCCAAGCCATCTTGAAGGAGGGTCTTGGCGTTGGGTTGGATGGAAAATCCCGCAGACTGCAGGTCGATAGTTCACCATGATACAGATGGGTAGCGAAAGTCCCCCGCATAGTATTTCAATGCTCTAAGTTGTTTGCTGGAGTGATGGCCTTCCCGTTATACTTA # Right flank : AAAACACGATAGAATCAAACCAACATCGAAGAGAAGGGAACTCCCATGCGTGAACGCATACTGAAAACCATCACCGCCACCACGTTGGCCGGGATCATGCTGGTCGCCGGCAGCGGGTGCGGTTCGAATCAACCCACTACCACTGCGACCTCGACACCAACCGTGGATGTCATCAAACAGATCGAGACTGATTGCGGCGTCCAGTCCGAACGCGGCAAAGAGCTCGTCTATCGATGGTGGAGCAATGAAGGTGAGAAGAACACCGCCCAATGCCTGCTCAACCACATGCCGCAAGACGTGTACGACCAATACGCACAAGGAGTTGGGGACGCGAGCGAGAAGTACATGGACGGCGGTAGCGCTACATATAGCGACTACACGAGCGAGGAAGGCTACCGCTACGAATGGACTGTGCACTACATAGGCGGCGGCACTGCGTTCAAGACATTCTCTATTCTCACCGTCACGAGAATCTAGTCGCATGTCATGCCGCGAAAACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGTGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //