Array 1 165531-166839 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWSP01000032.1 Cronobacter sakazakii 8399 contig084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165531 29 100.0 32 ............................. CATACGAACGCCGGCGTCACCGTTGGCGAATC 165592 29 100.0 32 ............................. AGTGCGCCCACGTCGCGTTTTACATTTGCGAC 165653 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 165714 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 165775 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 165836 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 165897 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 165958 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 166019 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 166080 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 166141 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 166202 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 166263 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 166324 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 166385 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 166446 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 166507 29 100.0 32 ............................. CATCCACTTCGCGTCGCGGCGGTATTTTTTGC 166568 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 166629 29 96.6 32 .C........................... CATACGGGTCATAGTCTGTGATTGTGCGGCCC 166690 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 166751 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 166812 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193238-193693 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWSP01000032.1 Cronobacter sakazakii 8399 contig084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193238 29 93.1 32 ...........A.............G... CAGGAGGGCGGGAATATTTTCCAGACCGGCGC 193299 29 93.1 32 ...........A.............G... TGAGGGTGGTGACCTGCGAAATGGGGTTGTTT 193360 29 93.1 32 ...........A.............G... GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 193421 29 96.6 32 ...........A................. CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 193482 29 100.0 32 ............................. CGTGCGCAGGTCGCCGAGTGTGTATTGCGCCA 193543 29 100.0 32 ............................. CGAAGACCAGAGAATAGCCATAATTTGGCGGT 193604 29 100.0 32 ............................. TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 193665 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTGCCTATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCTAAGTGCATGATATCCATCATGTAACCCTCTGTTTTCGTGCATTGAAACAGCGGTGATACAACTTTCGTGTATCACTTAGGACGCTAATCAATGTCGCATCTTATGCTTTCCCGTCACGGGATCTGGTACTACCGTAGGGTCTACCTGACACCTCGGAAACGCCGTGAAAT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //