Array 1 282921-280360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXET010000006.1 Bifidobacterium pseudocatenulatum strain YIT12217 YIT12217_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 282920 36 100.0 34 .................................... CGGATGAGTTCACGCCTCCGATAAGCGTCACCGA 282850 36 100.0 36 .................................... GAAAGAACCGCACCTCCGATCATCGAATCTGAATTT 282778 36 100.0 36 .................................... TCGATGGGCATTCCGCAGAGCCAGCAGACTGCATGT 282706 36 100.0 36 .................................... CCGTCCGACCCGATGTAGGAGTCCGTCTGCACTATC 282634 36 100.0 37 .................................... CGCTCGTGACTTTCGTGATCCAGTCCGGCACGTGGAC 282561 36 100.0 38 .................................... TGGCTATCGTGCCGTCGCTCACGGATCCACCGCCGCTG 282487 36 100.0 34 .................................... TGAATGTTAGTTGTTGATGATGGAACAGTTGGAA 282417 36 100.0 38 .................................... GCAACGTGCCCATGCCGTCTAAAAGTGGTCGAATTCGA 282343 36 100.0 36 .................................... TCCGCTGAAAATCGTTGTTCTGCCGGCTCCAGCGTG 282271 36 100.0 36 .................................... ATGAGTCGCGGACGTTACGAAGTGTTCGAAAAAATC 282199 36 100.0 35 .................................... GGTGAGCACGAGTGGCCGTCCTATATGAGTCGCGG 282128 36 100.0 37 .................................... CAGCGGCTTGCGCTGACTCCCGGCAAACATTCGATAA 282055 36 100.0 35 .................................... GCGAGCACCAGAGCGGCCTCCTTGGGTTTCAGCAT 281984 36 100.0 37 .................................... GATTTGATTAACGAGCTGCTACCGGACGCCGACGTGT 281911 36 100.0 35 .................................... TCCAAGAGGCCGCTCACGAGCCGACCGACGAGGAA 281840 36 100.0 35 .................................... GCCACCACCGCAAGCCAAACGGACTCTACCGGAAA 281769 36 100.0 37 .................................... ACGGTCGTCTTGTGCGATGGCGTCTGGCGTCGCGCGC 281696 36 100.0 35 .................................... ATGATTTCGTGGATGGTGCTTTCGGTCGCGTTCAA 281625 36 100.0 37 .................................... GCCGGTGGCGGCGGCGGAGATCAGGGAGGCACGGGCG 281552 36 100.0 39 .................................... TGGAATGGTGTCGGCTGGTGACCAGCGGTATGCTGGCGG 281477 36 100.0 35 .................................... TTATAGCGTTCCGGTAGGCGGAACATGTTGCGAAA 281406 36 100.0 34 .................................... CTAAAAGTGGCGTGCGTGCAATGTCGATAGCGTC 281336 36 100.0 35 .................................... AACAACAATGTGAGCACGGCAAACCAACAATTGGC 281265 36 100.0 35 .................................... AGGATCACCGTGACGATCAGCAACAACTCCACCTG 281194 36 100.0 36 .................................... ATGGCGCAGAAATACGGATGCCTCGACCAAGAGACA 281122 36 100.0 38 .................................... CGGCACGGAAGACAGGACGGGACACGTCAGGCGATCGG 281048 36 100.0 37 .................................... GTGGCGTTTTCGGTGGCGTCAAGTCAGTCGCGTCCGA 280975 36 97.2 37 .G.................................. TCGTCCTCATGCGGATCCATGAGCTGGTGGACGTGTT 280902 36 100.0 38 .................................... GATAGGCAATGTTTCCATCAAAATTATATCATGCGGCG 280828 36 97.2 36 ...................................G CTGGTCTGCACGAAGGAACTGTGCGACGAGATCGTA 280756 36 100.0 37 .................................... CTCGACGGTGACAAGGTCGGCAGCGTCGTCAACGGAT 280683 36 100.0 36 .................................... GCGCGCGGCGGCAATCCGGAGACTGAAGCCAGGTTC 280611 36 100.0 36 .................................... GAGCTCGTCTTCCGGCGTCAGTGCTTGTTCGTTGCG 280539 36 100.0 36 .................................... GAGAGATAATAGTTGGCGAGCCACTGGCTCAGATAG 280467 36 100.0 36 .................................... TTGTCGGAGTACGTGATGGTGAACTGGTGGTTGGCG 280395 36 94.4 0 ..................................AG | ========== ====== ====== ====== ==================================== ======================================= ================== 36 36 99.7 36 ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Left flank : GATGATAGACGTCGTGATCACGTGGCAAAAATATTACGGTGCTATGGCGAGAGGTTGCAGTATAGCGTGTTCTTTCTGCGGATTCGGCCTGCAAAAATGCTGGTTGTCCAGAATCTAATAGAAGTTGAAATCGATGGTTCAACGGATTCAGTTGTTGTCTGTTTTCTCGGAAAAGAAGAGCAGGCAAGAGAGGGAATGTCATTCTTGGGACGACGGGAATACAGTGATTTAACCATTCCGACGGTTATCTGATTTCACTTTAACCTCTCTGATTGTCTTTCACCTATGTGATTGTGGCTTGATAATTCAAAAGGTTTTTTATGAATTTTGGAATACGAGAGGTGAATCATTGCTGCGACACGCGATGACCTCTCGCATGAGGAAATATAAGGGTTTATGTCTCTTTTTCTGGTGATAAACTGACTGGAGGGAGAGGTATCTGTTCCGCTCTCGCAAAGTTTTTAATTCGCTTAGTCATTAGAGCGGATTAGAATGAGACC # Right flank : TCTATTGGCTCTGATTGTCGTTGTGCGCCCTGGCTTGTGAAGCCGCTTTCTGAATTAGGAATAGCTGCTATCAGGGAGGGCAAGAGAACTATGTCAAATTTGACGTAGATTGTGGCATTTTCTGTGGCCAAGTTCATCCTTGATGAAAGGATTTCTACTTGTAATGTAGTATTGGTGCGTATGATGCTGAGAATTGACGAGCGCGATTTGAGGTCGAAGCTCAATGAGCACAGGAGCCTTATTGGATATGGTTCCAAGGGCGACGGCATCGCCAACATTGTTGCGGGCCTATTCTATATTCCAACAGCATGGACGTTTGCGGAATTGCCGATGCGGGCACGATGCTTATTTGCTGTGCTGGGTGTTGTGATAATCGCGTTGGGTGTCGCGAGTATCGTATGCAAGGGACTCACTTCCGAAAAACTATATAAGGAAATCGAATCGATGAACAGAAGAGCTAGCTCTCTCATTGCGGTCAAGGATGGCATGGACGCGCTGTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTGAGCTAATCAGCTCAGGACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.00,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //