Array 1 7727-5377 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCJ01000004.1 Listeria monocytogenes strain ICDC_LM0263 LM0263Scaffold4_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7726 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7660 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7594 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7528 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7462 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7396 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7330 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7264 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7197 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7131 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7065 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 6999 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 6933 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 6867 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6801 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6735 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6669 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6603 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6537 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6471 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6405 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6339 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6273 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6207 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6141 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6075 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6009 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5943 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5877 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5811 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5745 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5679 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5613 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5547 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5481 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5415 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5380,5383,5388] ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //