Array 1 981685-983665 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_wt7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 981685 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 981746 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 981807 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 981868 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 981929 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 981990 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 982051 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 982112 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 982173 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 982234 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 982295 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 982356 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 982417 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 982478 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 982539 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 982600 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 982661 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 982722 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 982783 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 982844 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 982905 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 982966 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 983027 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 983088 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 983150 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 983211 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 983272 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 983333 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 983394 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 983455 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 983516 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 983577 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 983638 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 999798-1000376 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036168.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_wt7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 999798 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 999859 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999920 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999981 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1000042 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1000103 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000164 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000225 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000286 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000347 29 96.6 0 A............................ | A [1000373] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //