Array 1 12345-13622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPIP01000038.1 Mycobacterium tuberculosis strain 2565P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 12345 28 100.0 46 ............................ ACGGAAACTTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 12419 28 100.0 49 ............................ ACGGAAACCATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 12496 28 100.0 43 ............................ CGGAAACTTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 12567 28 100.0 47 ............................ CGGAAACATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 12642 28 100.0 48 ............................ CGGAAACCATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 12718 28 100.0 49 ............................ ACGGAAACTTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGG 12795 28 100.0 43 ............................ CGGAAACTTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 12866 28 100.0 32 ............................ ACGGAAACCTTGAATAACGCGCAGTGAATTTC Deletion [12926] 12926 28 92.9 48 .CG......................... CGGAAACCAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG A [12930] 13003 28 100.0 44 ............................ CGGAAACACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCT 13075 28 100.0 44 ............................ CGGAAACCCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 13147 28 100.0 44 ............................ ACGGAAACCGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 13219 28 100.0 44 ............................ ACGGAAACTGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 13291 28 100.0 49 ............................ ACGGAAACTCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 13368 28 96.4 48 .........................A.. ACGGAAACTCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 13444 28 100.0 47 ............................ ACGGAAACCCTCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGT 13519 28 100.0 48 ............................ ACGGAAACCCAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGA 13595 28 78.6 0 ...................T..ACC.CC | ========== ====== ====== ====== ============================ ================================================= ================== 18 28 98.2 46 GTCGTCAGACCCAAAACCCCGAGAGGGG # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGGCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : CCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGGTACCCGCCGGAGCTGCGTGAGCGGGCGGTGCGGATGGTCGCAGAGATCCGCGGTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 71-1049 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPIP01000068.1 Mycobacterium tuberculosis strain 2565P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 71 36 100.0 38 .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 145 36 100.0 34 .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 215 36 100.0 38 .................................... CTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG 289 36 100.0 37 .................................... CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 362 36 100.0 41 .................................... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 439 36 100.0 40 .................................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 515 36 100.0 36 .................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 587 36 100.0 41 .................................... TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGG 664 36 100.0 24 .................................... CTTGAATAACGCGCAGTGAATTTC Deletion [724] 724 36 94.4 36 .CG................................. ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA A [728] 797 36 100.0 37 .................................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 870 36 100.0 36 .................................... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 942 36 100.0 36 .................................... TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 1014 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 99.6 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : AGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGAG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 159-772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPIP01000010.1 Mycobacterium tuberculosis strain 2565P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 159 28 100.0 46 ............................ ACGGAAACCTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 233 28 100.0 46 ............................ ACGGAAACCCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 307 28 100.0 45 ............................ CGGAAACTTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 380 28 100.0 42 ............................ CGGAAACCTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 450 28 100.0 46 ............................ ACGGAAACTAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 524 28 100.0 44 ............................ ACGGAAACCCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 596 28 96.4 45 ......G..................... ACGGAAACTGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 669 28 100.0 48 ............................ ACGGAAACGCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 745 28 96.4 0 ...C........................ | ========== ====== ====== ====== ============================ ================================================ ================== 9 28 99.2 45 GTCGTCAGACCCAAAACCCCGAGAGGGG # Left flank : CCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAG # Right flank : GACGGAAACTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //