Array 1 7323-6962 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000121.1 Limnoraphis robusta CS-951 contig121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================= ================== 7322 23 100.0 45 ....................... CAGGAAAAAAAACCACCAAGACACTAAGACACTAAGCAAGCATCT 7254 23 95.7 44 ....C.................. AGGAGGATAAACCACCAAGACACCAAGAAATCAAATCTTCGTGA 7187 23 100.0 45 ....................... TAGGAGGATAAACCACCAAGACACCAAGACACTAAGAAATCAAAT 7119 23 87.0 45 ....TG..T.............. TAGGAGGATAAAACACCAAGACACTAAGAAATCAAATCTTCGTGA 7051 23 100.0 44 ....................... AGGAGGATAAACCACTAAGACACTAAGACACTAAGAAATTAAAT 6984 23 87.0 0 ....TG..T.............. | ========== ====== ====== ====== ======================= ============================================= ================== 6 23 95.0 45 CTTTGTGCCTTTGTGGTAATTTT # Left flank : CCAATACTCCCGCAACCGTCGGCGCTGGAATTAGTGCGATCGCTCCCGGTAAAGCTGTTCAACCCCATCATCTCAAACTGGCTGAACAAATTCTAGCAGCAGTTGGGGACGTTGTGGAAGTACCAGAATATTTGATGGATGCGGTAACAGGGTTATCCGGTTCGGGGCCTGCTTATGTTGCCCTGATGGTTGAGGCTCTAAGCGATGGCGGTGTAGCAGCAGGACTCCCGAGAGCGATCGCTTCAAAACTGGCTTTACAGACCGTTCTAGGCACCGCAGAATTATTAAAACAGACAGGTATGCACCCCGCAGAATTGAAAGATCGCGTCACCAGTCCAGGCGGAACTACAATAGCAGGCGTCGGCAAACTCGAACAGGCGGCTTTTCGTTCCGCATTAATAGAAGCAGTAAAAGCGGCTTGTGAACGTTCAAAACAGTTAGGAAAGTAACAGAAAAAGGAGAAAAAAACACCAAGACACAAAGAAATCAAATCTTCGTGA # Right flank : CGCGATCGCTTTAAAAACTGATGAATGAGTAATAGATTAACAAAATACAATTTCACGTTTATTGATTTATTTGCGGGAATTGGGGGAATTCGTCTCCCTTTTGAGGAACTGGGGGGAAAATGTGTGTTTTCTTCTGAATGGGATGAAGCCGCCCAAAAAACCTATCAAGCAAATTTTGGTGAATGTCCTTTAGGTGATATTACCACCATTGATCCTTGTTTGATTCCTCAACATGATATTTTATTGGCGGTGGTTTCCTGTCCAACGTNGTAATAGATTAACAAAATACAATTTCACGTTTATTGATTTATTTGCGGGAATTGGGGGAATTCGTCTCCCTTTTGAGGAACTGGGGGGAAAATGTGTGTTTTCTTCTGAATGGGATGAAGCCGCCCAAAAAACCTATCAAGCAAATTTTGGTGAATGTCCTTTAGGTGATATTACCACCATTGATCCTTGTTTGATTCCTCAACATGATATTTTATTGGCGGGGTTTCCCT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGTGCCTTTGTGGTAATTTT # Alternate repeat : CTTTTGGCTTTTGTGGTAATTTT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 10701-10445 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000014.1 Limnoraphis robusta CS-951 contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 10700 37 97.3 35 ..............A...................... TCAGCATCACAGAAATATTCTTGCTGATTAGTCTC 10628 37 97.3 37 ..............A...................... GTCTCTATTTCGGCATTGCAGGCTTGAATCTAAGTGA 10554 37 100.0 36 ..................................... TAAACGCGGGACTTTCATAAAAATCCCGAATAGGGA 10481 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.7 36 CTTTCCAACATTAATTTCCCCGCAAGGGGACTGAAAC # Left flank : GATTTTAGCTGAGAAAATTGTACAATTATTAACCCCGTTTGAAATCACGGTCTTAGAGCCTTGCGCTGGTCGGGGTCGTTTAGTAAAAGCTTTAGCTGAGAAAAACCGATGGGTTGAAGCGTATGAAATTTCTCAAAGTCGTTTTTCTCAGCTTGAGAAATTAGCAACTCATCAAGTTGTTGTCCATCACTATGATTTTCTCAAAGTGGACGCTGAGGCCCGATGTGCTGTTGATGTAGTGGTTGCCAACTTCCCGTTTTCTCAAATTGTAAAATTCATTGAGCATTCAATGAAATTTCTCAAACCCAATGGTCGCCTTCTGATGCTTGCACCATTAGACTGCTTCTGTGCCAAGAAACGAAACGCAGAATTTCTCAAACTCAATTTACATATTCACGCTATCCATCCCATTGTGGGGCGTGTGGCTTACCTGAAAAATGGAAAGTCAGAAAACAATCGTCAAATCTATGATGCAGTTTTTGATATTAGAGATTATCAAA # Right flank : GTTCGTTCTTCAAAGTCTCGGCACTAGAAACCCGGTTTCTTGAAGAAACCGGGTTTCTGGTTGTTTCTGGTTTGTACCTCATAGGAGCGTACACCGCTATATTAAAGTAGGAATATTTTTTCGATTTCATATAAAATAGATGCACAAACCAGAAAAGTTTCTAATACCAGTAATAGGATTAGTTCGGAGATAGCCTACTTCTATCGGATAATTAAACAGTGCTTGGATAATTGCTTAATGTCGATGGTCAGTAGTAATTCATAAATGTTGACTCTCCCGAGTTAATAGACATCTATACTGCTTCCAACTGCCAGCCCGATGCTTGCACTACTCTATTGCCGAGTTGAACCCCCTTATGCCATGATAGAGAATAAGTCAGAATTTGGTGGAAAGATGGCTCACGATATCCTTTCTGTTGACCGACTCAAACAGTTAACTAACCTATCGATAGAAACTTTAGAATCTCTGCTAAAAAGTCCTGATATTTCTTCTCAACAAAA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACATTAATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 12781-11944 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000014.1 Limnoraphis robusta CS-951 contig014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12780 37 100.0 35 ..................................... TAACGTGCTGTTGGGGTCAAAAAGAATTGCAGATG 12708 37 100.0 35 ..................................... ACAATCTTGTGATTAGCAACCGTAAGAATTTCTTC 12636 37 100.0 35 ..................................... TTCACGGAGTTCGGAGTTACTGATACCCGTTGTTT 12564 37 100.0 37 ..................................... ACTTAGCCTGAGTCATATCAGGTAACTTAGCCTGAGT 12490 37 100.0 36 ..................................... CAGTCTTTACTTCAAAAGCAGATGTATCAAAACCAA 12417 37 100.0 36 ..................................... ATTTCTTATTATTAATTATCCCGGGTTTAAAGTTAG 12344 37 100.0 34 ..................................... AAATTCCGTATCTTTCTCTAAGAATTTTTACCAA 12273 37 100.0 35 ..................................... AGTTCTACTAACTTCTGCTCAGTTGGATTTAAACT 12201 37 100.0 36 ..................................... AAGAAGAACTTATCGGCGCGTATCGTTTTCAAGTCT 12128 37 100.0 38 ..................................... AGTCCAGTCACAACGTCCTGACGGCCGTTCGTATTCAT 12053 37 100.0 36 ..................................... TTTTATCCGTTGAAGAAGAACATGAATTAGAAGCGG 11980 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 100.0 36 CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Left flank : ACAACATATTATCCTCGAAACGCCAATGGAAGAACCCGCCTGGAATTTGTTAAAAGAGAAGCTTCCGACTCATTTACATTCTCGGTTTGTTTACAGCAAAGGCAAAGTCACGGTTCGGGGTTTAGGGGTGATGAATGCCAGTAAGCAACTGGAATCTTTAATTGAATGGTTAGATAAAATGCAGGATGTTCTCAGCGAGAAGAAGGAAGAAGTGATTCAACTGGGTTAATCTCCTGACATCCTCGGGTTGGGGGTAGACAAAATCAGAAGGCTGTTTTACTATGTAAACAGTTAGATTTTTCGTGAACCGAAGCTACGGCGAAAACCCCAGGGGGTTCACGAAAATCGCCAGAACCTCGACAAATGAATAGTTTCACAGTTTCGGTTGTTGGTAAAAGATGCCGGAGTCGGGATCTTTCGAGGGCTGAAATGAACCTAATTTTTAGGTTTGCCAATTTCGGCTTTAGAATGACTACCCAGACTCACCTTCAGTCGGCGGA # Right flank : TCCTAATTTGTTTAATGTTTTCCCCGCAGATGCTTCACTACGCATCTGTTTTTTATTGTAAGTGGTGTACTAAATTTTGTCAAGTGTCATTTGACAACACTTTACGGATACACCAAAAATAGTGTAAAGTGGGATTTGAAGTTATTGTAGGTATTCAAATGCTGATAAAGCGAACAGTTATCGCCACAGCACCGGATGATTTTGGTGAAAAAGTCAAACACGCTTGTGAGACGTCGCAACTACCGATTGGTGATATCTGCCGGATTGCGGGTATTTCCAGAGAATTCCTTCACGCGGTAACAATTAATAAATACCCTCACATCAGTGAGGATAAATTTAATGCGCTATGCTATGCGCTTGAGAAAAAGCCTGAAGATTTCGGGGTGCGGTGGGAAGACGCGGTAATTCACCGCCCAGATTCTGAGAAAGTCGCTCAAAAGCTTGCAAAGCGTCCCATTGAAAAACCCATTGATTTGGCGCAAATGCACCATATTTTGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 5371-6345 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000179.1 Limnoraphis robusta CS-951 contig179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5371 37 100.0 37 ..................................... TTTATTAGTGACCATACGAGCATTAATGTAATGCCGT 5445 37 100.0 34 ..................................... AAGATTAATGAAATATGTAATTCGACCGTGGAGC 5516 37 100.0 35 ..................................... GGAACCGGGAAAGGAATTGAAACAAACTTCGGAGA 5588 37 100.0 31 ..................................... CGCTAGTAATCCCACACCGATCCTTCCCAGA 5656 37 100.0 34 ..................................... AATCGTGATTCATGGGGTAGTGTAGGCAAAATGC 5727 37 100.0 40 ..................................... GGATACCATCCGGGCTGAATCATTTACAGAAAGGGCGATA 5804 37 100.0 41 ..................................... AACCCATCTTTTAGGGATTTTAATTGGGTATTGATCGGCAG 5882 37 100.0 33 ..................................... TGGGGATGAGGATAGCTCAGAGGATAACTCCGA 5952 37 100.0 34 ..................................... GTAATCTCTGATGATGATGATGATGATGAGGTTG 6023 37 100.0 35 ..................................... TAAAGAATCCCGCTTTTTTATGCTAGAATAAATCT 6095 37 100.0 34 ..................................... ATAATCTTCTATTCGTAAATAACTTCGATATTGA 6166 37 100.0 35 ..................................... ACTTTCAGAGATTGTAAAGATTTATTAAAGCTATA 6238 37 100.0 34 ..................................... GCCTTAGAAGCGGGTAAGCCCCTTATTCAACCTA 6309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 14 37 100.0 35 GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Left flank : TAACAAGAATCCCTATTAGGGATTGAAACAAGCGGAAGCTGAAGAAACTGTATCAGACAAACTGTGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACGAGGCGGGAGCAAATTAGATGAATTTTTAGATGGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACGCTCCCCTGAGTTCGACATAACTTCCCCAAGTTGTGGCAGAAGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACAATAGCGTGAATGGGTTTTTCTCCCCATACTCCCACCGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACTACCTAGCTCTTTATCAAAGTTCCATTGAACTATTAACGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACAAAACAGGCACAATCTCAAGCTCAACTGCAATCGTTACAATTAACAAGAATCCCTATTAGGGATTGNAAAACAGGCACAATCTCAAGCTCAACTGCAATC # Right flank : CGAGATGATAAGGGGTAACGACACCTGTAACCCGAGTTACAATTAACAAGAANAGAATCCCTATTAGGGATTGAAACGAGATGATAAGGGGTAACGACACCTGTAACCCGAGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACTCTACTTCCCCATAATCGGGAGAGATGATTTTTAAGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACTTATTGGCGGCTTTCTCTGGGGAGGATTAACGGGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACCCTCAAGTTTTGTGGAGATTTAAGGATTATTTCCAGGGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACCTGCAATCGCGAGTAGGTTCAATTTCTAGCTTCACGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACTCCAGCATAATTAGACAATAACTCATCATCAATAGTTACAATTAACAAGAATCCCTATTAGGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 6456-9939 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000179.1 Limnoraphis robusta CS-951 contig179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================== ================== 6456 37 100.0 35 ..................................... TCTACTTCCCCATAATCGGGAGAGATGATTTTTAA 6528 37 100.0 33 ..................................... TTATTGGCGGCTTTCTCTGGGGAGGATTAACGG 6598 37 100.0 37 ..................................... CCTCAAGTTTTGTGGAGATTTAAGGATTATTTCCAGG 6672 37 100.0 35 ..................................... CTGCAATCGCGAGTAGGTTCAATTTCTAGCTTCAC 6744 37 100.0 34 ..................................... TCCAGCATAATTAGACAATAACTCATCATCAATA 6815 37 100.0 41 ..................................... CAGACTGGAGATAATGCTACAGCTCGTTGGGGCGTTTCCGG 6893 37 100.0 34 ..................................... GAATCGCATACACTGGCAAAGAGTATCATATCAC 6964 37 100.0 34 ..................................... CAATTCTTATCAGTTTTTTTATCCTGTAAAAAAA 7035 37 100.0 34 ..................................... TAATTAAATGGCTACAATTACCGCTACAGAAAAG 7106 37 100.0 37 ..................................... AGCGTTACTGAAACAGGTGCTAGACTGGTTCTTGAAG 7180 37 100.0 35 ..................................... TCATTGGTGCGAGATTGATTGATATCGGCTGTATT 7252 37 100.0 36 ..................................... CCACTATTGCCAAAATCCAAGGCTCTTTTGTAAAAG 7325 37 100.0 35 ..................................... ATAAAGCACGAGAAAATCCCTTACAGTGGCTCACT 7397 37 100.0 34 ..................................... GAATCAAACTTTTGCCGTTGCCGAATTTGCCCGA 7468 37 100.0 34 ..................................... CCAATCCATCCGATAAACAGTTTCCGCACCCCGA 7539 37 100.0 54 ..................................... TGCCTAATCCAGCTCTAACGCAACATCTCCTGAGCCAAGTTACAATTAACAAGA 7630 36 81.1 38 A.CC.T....GN.-....................... TGCCTAATCCAGCTCTAACGCAACATCTCCTGAGCCAA 7704 37 100.0 32 ..................................... TTCTAATAACAATTCACAAATCTGCTTGACAG 7773 37 100.0 34 ..................................... TGCGATCGCCACTCCTCAAAGTGATGGAACTCAC 7844 37 100.0 42 ..................................... AACATCAACGGGCATTCTAAACGAGCCTACCGCATCTCTATA 7923 37 100.0 34 ..................................... AGTCGGATGGTTATCTGGAAAGCGTCGGGGTTAG 7994 37 100.0 38 ..................................... AGGATCGAACGGATAGACCGAAATTCTTAATTGCGCTG 8069 37 100.0 39 ..................................... AGCTTTGTAGCCTGATTCAGTCTTAAGTTTGGGCAATGT 8145 37 100.0 36 ..................................... CCGATCCGCCCAAAAGCGATCGCACAATTGGAGATT 8218 37 100.0 40 ..................................... AATTCTCATAGGGGCTGACTTGAAACTGAGCATCTTGATA 8295 37 100.0 34 ..................................... AACTCAAAAATAGCTTCTTCACAAACACTCTTCA 8366 37 100.0 34 ..................................... CGTTACTGTGAATATCAACGACTTTGTAATATTC 8437 37 100.0 34 ..................................... CGGCGATAATCCTCGTAAGATTCGTTAACCAGTG 8508 37 100.0 34 ..................................... GATGGCAGTAAAAACTAATGAATCGATAGCATTG 8579 37 100.0 34 ..................................... AGATTCCTCTGCTAAATCCATTAGAGCCTGTGCT 8650 37 100.0 34 ..................................... GAACGAAACGCTAGGATACTGTCTGGTTCATTCT 8721 37 100.0 41 ..................................... GCGGAAAATTCTAGGGGATAAGGGGGATGAGTTTGCTAAAA 8799 37 100.0 30 ..................................... ACAGATTCGAGAAGCTTCTGACGCTGAAGA 8866 37 100.0 44 ..................................... CGATAATCCCTTTGATAGTGGCAAGCCCTTTTAATTTAGCGAGC 8947 37 100.0 33 ..................................... AATCGGAATGGGATGCTTTTAAAGCGGCGGCTG 9017 37 100.0 35 ..................................... TTTAACCATCAGACAGTACCAATCCTCATAATTTT 9089 37 100.0 35 ..................................... CTTAAGCTGGAATTTAAGCAGAAATGAACCTTCTA 9161 37 100.0 35 ..................................... GTAGAATCTTCCGAGCATCATCTTTCCCCCCAATT 9233 37 100.0 35 ..................................... GGAAACTCTGCAAATTTTCCGAAAATTCCAAAGTG 9305 37 100.0 38 ..................................... AATTTGGAAGATTTTTTTGCATAAAAAAGCGATCGCAT 9380 37 100.0 35 ..................................... GTGAGTTGGGACGAAATACAGAACCGCCCGACCGA 9452 37 100.0 35 ..................................... CACATCTACAGGCGAAAGTACGGCAGCTTTTCCAA 9524 37 100.0 58 ..................................... NCTATTAGGGATTGAAACCACATCTACAGGCGAAAGTACGGCAGCTTTTCCAAGTTAC 9614 37 100.0 40 ..................................... CACCTCACTTGATTTCAGCTCACCGATTACCCGATAATAA 9691 37 100.0 31 ..................................... AAGTATCTAGCCAGCCAAATTCTTGATTTAG 9759 37 100.0 35 ..................................... TATCTTCATAGATTGAACAACGTTTGGTATCTCTA 9831 37 100.0 35 ..................................... TAACCTCATCCCGCCATCAAACGGATCATAGAAAA 9903 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================== ================== 48 37 99.6 36 GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Left flank : CAATTAACAAGAATCCCTATTAGGGATTGAAACGTAATCTCTGATGATGATGATGATGATGAGGTTGGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACTAAAGAATCCCGCTTTTTTATGCTAGAATAAATCTGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACATAATCTTCTATTCGTAAATAACTTCGATATTGAGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACACTTTCAGAGATTGTAAAGATTTATTAAAGCTATAGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACGCCTTAGAAGCGGGTAAGCCCCTTATTCAACCTAGTTACAATTAACAAGAATCCCTATTAGGGATTGAAACGAGATGATAAGGGGTAACGACACCTGTAACCCGAGTTACAATTAACAAGAANAGAATCCCTATTAGGGATTGAAACGAGATGATAAGGGGTAACGACACCTGTAACCCGA # Right flank : TTTGGTATAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 1-6256 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000170.1 Limnoraphis robusta CS-951 contig170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1 37 100.0 34 ..................................... AGCTTCCACCTATTACGGGGATATGTTGACACTA 72 37 100.0 34 ..................................... TACCTTCCGCCTCTTTCGGGGCGCTACCTTTAGG 143 37 100.0 35 ..................................... GGAAAGCTGGGAAGGTAATTGGTGAGTCGAAGCGA 215 37 97.3 37 ..............T...................... AGGAAGTAAGTTGAGTCTTGGGGACACATTTTGTCTA 289 37 100.0 44 ..................................... CAAGCCATTGCCCATCCATGATTCGCTAATTCTTCAAGTTGCTG 370 37 100.0 36 ..................................... CAGAATAGCTTACAGGCTTTTTATCACCTATCCATT 443 37 100.0 35 ..................................... TAGTAGTAAGCCATTCTTACGAGCATATTTATAGG 515 37 100.0 35 ..................................... AAAGGAGACACAGGAGCGCAGGGGTTGCAAGGAGT 587 37 100.0 31 ..................................... ATTGGTGTGTATTTCAAGAAGAGTGATCAGA 655 37 100.0 34 ..................................... CGAGATGAATGTAATGATGATGAGGATGATGATA 726 37 100.0 38 ..................................... ATCCACGATATCCTCGCGAACAGATTAGGGTATGGTTT 801 37 100.0 35 ..................................... CAGCACTGAGTAGCAGTGCTTACAGGCTATTTCCT 873 37 100.0 35 ..................................... TTGATCGATGCTTTTGTATTCCCTGTAAAACAAAA 945 37 100.0 33 ..................................... GTCTGATCTACAAGCTTCAAATAAGGATCTGTT 1015 37 100.0 33 ..................................... GGAGCCAGCCTAATCTCACTAGGGCTAAACGAA 1085 37 100.0 34 ..................................... TATTATTGACGATCTTCAAATGGATGGTGAGGAA 1156 37 100.0 34 ..................................... TCAACATATCTGAAAGATTTAACTACGTTTGATA 1227 37 100.0 34 ..................................... GAGCATTCAGGCACATTCAATTCAAGAGTGCTTC 1298 37 100.0 39 ..................................... TCTAAATTTAACTTCGGCGGGATACCTAACCCATCTGGG 1374 37 100.0 34 ..................................... CAATTTCTAGCTTCACAACGGGTTCACAAGAAAG 1445 37 100.0 33 ..................................... AACTTTATGGGGAATGGGAACAGGGAATCGGAA 1515 37 100.0 37 ..................................... TCATAACTATCGTTTTTGCAATTCTATCTCTTTTTGA 1589 37 100.0 34 ..................................... AATGGAACCACCATCTGGGCAGATGGACACAACA 1660 37 100.0 39 ..................................... CCGAAAACCTCCCCTTGGAATATCAACGAGTTAGCGAGA 1736 37 100.0 33 ..................................... TTGGATTTATGAGCCTTACCCAGTCGGAGGAAA 1806 37 100.0 34 ..................................... GACTAAAACTTCTAAAAAAACAGCAAAACTGCAA 1877 37 100.0 40 ..................................... TGATTGTACATTGATAGATTGCCCGTTAGATTGATTGATT 1954 37 100.0 34 ..................................... ACCCAAAAGCCTCTGCATAACTGGGGATTCAACC 2025 37 100.0 33 ..................................... CCCTCAAAAGATGGTGGGGGATGAACAATAAGC 2095 37 100.0 33 ..................................... GAATTTAACTAACTACTGAACAATGGAACCAAT 2165 37 100.0 35 ..................................... ACTACTTCCAAAACCAATCAGCAATTGTGGAAAGT 2237 37 100.0 39 ..................................... CATCACTGGCTGTTTTGATTGGTTCAACTGACCCCGAAA 2313 37 100.0 37 ..................................... GCCTGATGGAGATATTCGGAGTTTTAATCATACTAAT 2387 37 100.0 34 ..................................... ATCGGAAGCGGGTACAAGATCTATGCCGATAGCG 2458 37 100.0 34 ..................................... ATAAATCCATTCTCGGATTAGGAAATTCATTCTT 2529 37 100.0 34 ..................................... AAGCTATCAAGATGCTCAGTTGGAAATCTCCACC 2600 37 100.0 36 ..................................... AACTAGAGACTGTTTGTACACGTGTTCATCAACCCA 2673 37 100.0 34 ..................................... AAGTCTTGTATATCTAAGTCTAGTTCTTCTCCAA 2744 37 100.0 32 ..................................... ACTCGCGCCACTCTTTACCTTAACGCTGACTA 2813 37 100.0 34 ..................................... TTTGTACACAATATCTTCGTTTCCTATCTCAAAT 2884 37 100.0 40 ..................................... GCCAATCTTGCTACAGAAAATCACGCTAGCTTTGAGCAAA 2961 37 100.0 45 ..................................... ACTAGAAAATCAGCAGAACGAGTTCAATAGCAGACTGGCTAGCGT 3043 37 100.0 34 ..................................... ACCCAAAAGCCTCTGCATAACTGGGGATTCAACC 3114 37 100.0 33 ..................................... CCCTCAAAAGATGGTGGGGGATGAACAATAAGC 3184 37 100.0 33 ..................................... GAATTTAACTAACTCCTGAACAATGGAACCAAT 3254 37 100.0 35 ..................................... ATAACTCCCTATATTCATCGCTTTCTCACCATCAC 3326 37 100.0 34 ..................................... ACAAAGGGCAACTTCGGAAAATAGCGATTCCAAG 3397 37 97.3 37 ..............T...................... ATGGTACGGACGATTGTGATAAAAATGAAGATGACAA 3471 37 100.0 32 ..................................... GTTTTGTTGCTCAATCTGGGACTGATGACTGA 3540 37 100.0 34 ..................................... ATCGACGCTCCTATCCCAGCCTCTTCAAATCCGA 3611 37 100.0 39 ..................................... AATGAAAATAACTGAAGCTGTTTTAATTTTTCTCATTGC 3687 37 100.0 34 ..................................... AGTTAGACGAACAGATACAGAGGGAATTTCAGAG 3758 37 100.0 34 ..................................... AGTTAGACGAACAGATACAGAGGGAATTTCAGAG 3829 37 100.0 34 ..................................... AGTTAGACGAACAGATACAGAGGGAATTTCAGAG 3900 37 100.0 34 ..................................... AGTTAGACGAACAGATACAGAGGGAATTTCAGAG 3971 37 100.0 34 ..................................... AGTTAGACGAACAGATACAGAGGGAATTTCAGAG 4042 37 100.0 34 ..................................... AGTTAGACGAACAGATACAGAGGGAATTTCAGAG 4113 37 100.0 34 ..................................... TCCTAAGCTGAATTCAGACTGACGCTTGGAATAG 4184 37 100.0 37 ..................................... TTCGGCTGTGGGATATCGAACCTCACCCGACTGCCAA 4258 37 100.0 35 ..................................... AGGGGAAAACCTTACAGGCGATTCAAATAGACAAA 4330 37 100.0 35 ..................................... CGGCCTCCAACAGCTTCAGACATCGCTCGTTCGAT 4402 37 100.0 34 ..................................... TAGATATAAAGGATGTGGTGACTGCCAGCTACCG 4473 37 100.0 35 ..................................... AATGTTGACTTTTCTCAAGCAGGACAATTTTTAAA 4545 37 100.0 34 ..................................... TTCTATTACTAAATTATTTGAATTTACTATTTTC 4616 37 100.0 35 ..................................... CTTTTTCAAACGTTCCAGCAGGTGCTGCCCCAACC 4688 37 100.0 37 ..................................... ATGGGGGTAAAAATACCCCCCTTGAGAATCCCTATTA 4762 37 100.0 38 ..................................... GAAACTCAACAACAGCAAGGTTTCAAGAATATGATGAC 4837 37 100.0 38 ..................................... CAAATATTACCAGTGATTGGAGAGATGAGTTTATAGGA 4912 37 100.0 32 ..................................... ATTTCTTTGTAGTTGAGGAATCTTTCTATCGA 4981 37 100.0 37 ..................................... CAAACCTAATGTACCAAGACTTTAATACTTGATGAAA 5055 37 100.0 36 ..................................... CTTGTTGCTCTGGTACAAATCCAGTTACTCCTCAAT 5128 37 100.0 34 ..................................... AAATTATTTGTCTTTGAGGTTTAATTTCAATGCC 5199 37 100.0 34 ..................................... AAATATTTCTTCACTCCTTTTCTGGTTTGGTTTT 5270 37 100.0 39 ..................................... TTAGAGATTTTGCCTTCCGAGGAAGAATTTATCGATAAA 5346 37 100.0 32 ..................................... ACCCTGATAGTGATAGAGATTTCACCCTTAAA 5415 37 100.0 36 ..................................... AGATTTAAGTAGTTATTCTAGCCTTTTGACTTCGTT 5488 37 100.0 36 ..................................... ACTTTGTTTCAGACAGCGCTCGTTCAGGAAATTCAT 5561 37 100.0 36 ..................................... AGACAAACTTGTGTCAAGTAGAGAACCATAACGATT 5634 37 100.0 37 ..................................... TTCTGTTGATGTAAACCGCTTATCATATTTATCGAGC 5708 37 100.0 37 ..................................... GAGGAGAACTTCCTACACAGAGGACTGGTAAGTAAGG 5782 37 100.0 33 ..................................... TTTCAACGGTGGATATCACATTTACTCGGACAA 5852 37 100.0 36 ..................................... AGATTTAAGTAGTTATTCTAGCCTTTTGACTTCGTT 5925 37 100.0 40 ..................................... ATCCAGAATCATCTTCTGCTTGGCAATGTGAACCACAATT 6002 37 100.0 33 ..................................... AACTGGGTGATGGGGGATCAGTGCCGGATGAAG 6072 37 100.0 34 ..................................... AAAATTACCAACTTCTCTCATTTATTAATAGAAT 6143 37 100.0 40 ..................................... AATACCGAATGGGACGAATTCAAACAAGGATTATCCAAAG 6220 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 87 37 99.9 35 GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CGAGAGCCAAGAACCAAGACTTCTCCGGTGTTTAAAGTGGTGAGGAGTTCTTCTTTGATGGGGCGAAATTGCTCCGAATTTAACCAGAGATTCAGTTTTATTTTCAAGTTTTCTGCTGATTCGTAGCATTGGGATAGAAACTCTTTTTTGATTTGTTGACTGTTAGTAGGTCTGTTAGCTAGAATTTGAGTTAATTCTTTTAACTCTTGATGATGCTGGCGATCAATCGAAATTTGCTCATCTTTACTGTTAAGTTGAGCTTGATATTTTTCCTCATTTGCTGCGATCGCGGCTACCCCACCGATTAGGCCTGCCACAGTCCCAGCCATTGCTACAATGATTGCGATCGCAGTCATCATTACGGCTACAATTGCTATCGTTAAGGTAACTGTAACGACTCCTGCTGCCACTCCAGCGATAGTCTGCGTAAAAGTTCCTAGTATTGTCCCCAGTATTGTTCCTGCAATTAATACAGCAGCAAAAGCGACCTGCAACCCTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 8741-5864 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000228.1 Limnoraphis robusta CS-951 contig228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 8740 37 100.0 40 ..................................... GAGATTGTCCGGTTCGAGTCCGGCGATCGCTCTGCGACTA 8663 37 100.0 35 ..................................... AGATGTTTCCCACCAAGCATTGTCTCTTTTCTCAA 8591 37 100.0 37 ..................................... CTTTCTTCTCTAATTCCCATTGAAATTTTTTCTGGCG 8517 37 100.0 35 ..................................... GAGCAATGCTCCTAGTTTTATCTTGTTCAATCAAA 8445 37 100.0 35 ..................................... ATCTCCCCATCCGTCTCCCCATCCCAAATCTCTAT 8373 37 100.0 34 ..................................... ATCGCTTCCATTGGCATTAGAAAGATTAAGCTTG 8302 37 100.0 34 ..................................... CGGAGATAAACTCTAATAAATTAAAGCTTGCCTA 8231 37 100.0 36 ..................................... AGTTACAAGAGTTTAGGGACGGCGATCTTATCCTAA 8158 37 100.0 41 ..................................... ATACTTCTGTACCAGGTCTTTCGACCGTTGGATCGGTTTTT 8080 37 100.0 35 ..................................... ATAATATCTAATGCTTCTGACTTGGCAACCTCTAA 8008 37 100.0 39 ..................................... CAAATCTCTCTCAAAACTAAGCCAGCAACAATCAAGAAA 7932 37 100.0 34 ..................................... CATTCTAAGGCTTCTCTCTGTCGTTTTTTTTCGC 7861 37 100.0 36 ..................................... TTTTAGCTTTTTACACGCGGCAACCTGTTTTTCTGA 7788 37 100.0 35 ..................................... GACTCAGTAACACAGAATCGCGATCTTTGAGTTTC 7716 37 100.0 34 ..................................... TTGCAATTTCTTTCTCTAGTCCAGCAATTCTCAT 7645 37 100.0 36 ..................................... TGTTAACATTAATTTTGTAGTGAGTTAACACAAGCT 7572 37 100.0 38 ..................................... TAATGATTTTCGCTTGATTCCGTTTGCCTAAAAAAGTC 7497 37 100.0 37 ..................................... ACCCATTGAAATATATATAACAAATACCATAATTGAC 7423 37 100.0 35 ..................................... CAGTATGTTTACACAGGCGGAGAGGTCACAGCGAT 7351 37 100.0 36 ..................................... CCTTGTCTTCCTGTTTGATGCGATCGCTTTCTCCGC 7278 37 100.0 34 ..................................... GGCTCCGTCAATAGCTGCTAACTGTTCATTTTTT 7207 37 100.0 33 ..................................... GGGAAACTAGCGATTCCTTCATCTGTCGTTGCA 7137 37 100.0 35 ..................................... TTGGGAATCTTGCTCACAATATATGGAGCTAAATC 7065 37 100.0 37 ..................................... GCATCAGGAATGGGACTGGTAAGTTTGGCTCTTAAGG 6991 37 100.0 35 ..................................... TGAAAACTGAATCGCTAGAATCCTTGCTGTGTGGA 6919 37 100.0 36 ..................................... GGGTCATACCTTGTGACTGTCAGCACTATAAGGAAT 6846 37 100.0 35 ..................................... TTGACATACAAATCAAAAAAAATATGGCTGACTAC 6774 37 100.0 38 ..................................... TATCCAGCTACTCCGCCAAAGGTAAACGTCCTTAACTT 6699 37 100.0 36 ..................................... TCGGCTTCGATATCAGCCAGACGAGAGAACGTGGGA 6626 37 100.0 34 ..................................... AACGATAATTGTTAGTTACGCCTTGGATTAATTT 6555 37 100.0 37 ..................................... ATAGGGCAAAGGAATATATCTAGAATCCTATTAAGTG 6481 37 100.0 37 ..................................... TCAAAATATTTATCACCATCTTGATAAACCTGACGGA 6407 37 100.0 34 ..................................... TGCTGTGGCTGTAATGGTAAAGTTGTCAGTACCG 6336 37 100.0 36 ..................................... TATGCTTCTAGTTCTTTTTGCCAGCAATTTGTTTCC 6263 37 100.0 35 ..................................... TGATCACTATCGTGCCATTCAACGCGATTACATTT 6191 37 100.0 34 ..................................... GCTTGAACTACAGCCATTTTGCGACCATCCATTG 6120 37 100.0 36 ..................................... TTTTTCTTTGCATATGCCATTCAACTTGATATTCCC 6047 37 100.0 35 ..................................... TGCTGCGCTCATAACCAAAGCAACGATCTAGAGTG 5975 37 100.0 38 ..................................... TGTAGAAAGCGCATTTTCTTAAAGAGAAATGAATTTGT 5900 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 40 37 100.0 36 CTTTCCAATTAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : TGAATACATTATTTTATCTGGTGATTTATGACCTTGAGGACAACAAAGCCGCCAATAAACGCCGCAACCGCCTACATAAGTTGTTGATGGGCTACGGAAAGTGGACACAGTACAGCGTGTTTGAATGTTTCCTGACTGCGGTACAATTTGTGAAACTTCAGCAAAAAATCGAAGCGGTGATTAAACCTACTGAAGATTCTGTGCGGATTTATGTCTTGGATGCGGGGTCTGTGCGGCGTACTATTACCTATGGTTCGCAAAAGCCTAGACAGGAACAGACGATTGTTTTATAGTGTGTTTATGCGGATTTTTGACGGGTCGAAGCGCCCACGTTTTTCCCGGTACTCCCGTCAATTCGCCAGAACCTCGATAATTGAATAGTTTTAGCGTTTTTGTTCACCTCCGGTTGGGGTTGGCCACAGGCTGAAATCCATCAGTCGGATCTCTCCCGTCATTTTCGGGTGTTTTACCCTTTCTTAGTCGGGTTTTCAGGCCACAGT # Right flank : GCCCGACCGTTAAAGTGAAGGCTTGATTTTCAAGTTGCTGTAAAATTTTCTCTGATGTATCTTGCGATCGCGTCGCTAATCTCGCTATCATAGAGTGTTTGGGTTAAAAGATTATAGGAAGTATCATGGCAAAGCGTGTTCAAGTCGTTCTCAGACAGGACATCAGCAAACTAGGGCAAAATGGAGATTTAGTGGAAGTGGCGCCTGGTTATGCTCGGAACTATCTTCTCCCGAGAAGTTTGGCAGTTCGAGCCACTCCAGGCATTCTCAAGCAGGTTGAACGTCGTCGGGAAGAAGAACGTCAGCGACAAATTGCACTCAAGCAAGAAGCGATCGCCCAAAAAACTGCATTAGAAACCATTGGTCGTTTTACCATCGCTAAACAGGTGGGTGAAAATGAAGCGATTTTTGGGACTGTAACCGATCGCGAACTTGCAGAAGCCATTCAAGCGATGACGAACCAAGAAGTTGATCGTCGGGGTATCACGTTACCCGATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAATTAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 30210-31645 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000229.1 Limnoraphis robusta CS-951 contig229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 30210 36 100.0 39 .................................... TTTAAGTTTTCCTCTATTTTTGCACGCTCATGTTCGCAG 30285 36 100.0 32 .................................... GTGTAAAAGTATAATTGTTTCCCGCTCCTCCT 30353 36 100.0 43 .................................... TTTTCTACCATTTCTCTGTCTTCGTAAAAGTTAAAACTTTCTA 30432 36 100.0 34 .................................... ACGACAAGCCTGACTACATCTCCGATGAGTAATC 30502 36 100.0 37 .................................... CTGTGCTGGTTTCTTCATTAGGATCAATCATCTAAAA 30575 36 100.0 34 .................................... CTTAGTGGAAGAAAGAACAGCTTTCATCAACATG 30645 36 100.0 39 .................................... AATTTGTAGTCAGACATGTTTTTGTCCTCTCTTATTAAT 30720 36 100.0 37 .................................... ACTTGGTGCATTTTCTTATATACACTTCAAAACTATC 30793 36 100.0 39 .................................... GACTGAGTCTGTTGAAAGACGCAGTTTTGGTATAAAGCT 30868 36 100.0 39 .................................... GAACGCAAGTCTTTCTCTTGACTCGGATTTCCATTTTTG 30943 36 100.0 42 .................................... ATTCCTTGAAAGTACCTATATGTCTAGTAGTATCACTACCAT 31021 36 100.0 43 .................................... ACTTTTCCTCCTTAAATGAGAGTTAGAGATTTTTGTCTGCATT 31100 36 100.0 37 .................................... CCGTACACCTCGTTTACACTACTGTAGTGAGACAAAC 31173 36 100.0 42 .................................... ATTTACTTGATGTACGTAAGACAAAGTGAGTGTGGTGTTATC 31251 36 100.0 35 .................................... CATAATAACCCCACAATCCTTTTTCTCCTTCCAGA 31322 36 100.0 38 .................................... TTCCCGCACTGTAGCGGGAGAGTCGATTCTAACTTTTC 31396 36 100.0 36 .................................... TATAGTGGGTACATCCCAGGACAAGGGTGGTGCCGG 31468 36 100.0 35 .................................... TTTCCCTTTCCTCAAAGGAAAGGCCTCCTTCCTCT 31539 36 100.0 35 .................................... AATCAATTTCCATAACCCCCTTTCCGGCGACGACA 31610 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== =========================================== ================== 20 36 99.9 38 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GTCATACCAAGCTTCGGTTCTCGCTGCCAAAGCTTTGTTAAATACCAACCGCACACAACCAATTGTCCGGCGCAATATTTGTTCTTGCTCGGTAGTTGGATACACTCTGTAACGGTAGGCTTTTTCCATGCCTCACATTTTATCACAAAATCTGTGAAATACTTACAACCCTCTATGCACCAAAGTTTAATTACTCACTCTTCGCTCACCCCGTCGTCTGTCGTTGCTACGCAACAACTCGACTTCATTGTGAAGCTTCTCCCTCGTCCCCATTCCTCTCACCGCCAAACTGCGTTGTGGGGTGTGATATGATTGGTTTCGACGCAGGTCGCTCAATGGCTGAAACTATGATTTTTGCGTTGAGGTGCGTCGATTGCTTGTCTCATCAAGGTTTGAGGACTGTAACAATGGCAGTTTCAACTGTGTTACAAATGCTATGTTTGGGGGTGCGTCGATTTGTCGTCTGTAACCCTCTCTCAGTCTGCCTTCTGAGACGAACT # Right flank : CATTGTATTTTCGACAAATATTAAAAAAGGAGAGGAATTACTTTTCTCTCCCTTTATATTGAATAATGTTATTATCGATAGAATCAGTAAAAGTTCCAATTCCCTACATTCTCAATTACCCAATTCTCAAAAAGGGTTCATAGACTTCTCCACGCCACAGACTACGTTTATATCGTCGAATTTGCAACTGAATCGCTTGGCGATAGGAAACCTGAGATTGAATATCCCGATGAGACACTAACTCATTGGTTTCATCATTCTAGCCCCATCTGGAAACAGGTTCTTCCAAGCCAATTCTTGAAAAAAACTCATATAGCAGTACAAAATTCGGTGTTTGACATTTCTAAATCCTAGAATCCTTTCATAGTCTGCTGTTGCCTGTTGCCTATTGCCTATTGCCTATTGCCTATTGCGTAGCGCTATATCACTCCTCGAAATTTTGGAAAGCTCCTTTTCCATGCGTGACTATACTGAAACAGTAGAAAACACTCATTCCCTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 17760-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000209.1 Limnoraphis robusta CS-951 contig209, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 17759 37 100.0 33 ..................................... ACAGACGATATAAATTTGAACAGACAAAGGAGG 17689 37 100.0 37 ..................................... ATCAGGACTCATATCCTATCTCGGGAAACCTGTCAGG 17615 37 100.0 35 ..................................... GGGGTGATTTCTCCAACTATTAATCTTGTTATTTT 17543 37 100.0 36 ..................................... ATTACAGCCGGAAACCGCAGGGGTTTCCCGATACAG 17470 37 100.0 33 ..................................... TTTCAGCTTCATAATTTGAGGACAAGCAATAAT 17400 37 100.0 33 ..................................... GACTTTCAAGATTATTCTCGCGGCACCAATCAA 17330 37 100.0 39 ..................................... TGGATTTGCAACCAACCACTTTTTCAGAGCCTTAAAAGC 17254 37 100.0 36 ..................................... AGCGATCGCAGATTTGGATACCTTCTTTTCAGGAGA 17181 37 100.0 35 ..................................... GAGATTGATTCTTCCAAAAATACAGCCTTTGATTT 17109 37 100.0 41 ..................................... TAGCTCTTTCGATGTGCCAGACGTAATCTTGATTATTTACG 17031 37 100.0 38 ..................................... TTATTACTCCTTGAATGCCTAAAATGGGTAAGGCTGTA 16956 37 100.0 35 ..................................... ATATTGAAAATCTGTAAGAGACACTTGCACTTGTG 16884 37 100.0 34 ..................................... AAAGTATCTGAGTAGCTGAAAATTTTGATGAATA 16813 37 100.0 34 ..................................... ATTATTAGAAATTTCAGTAAGTTGAATATCACCA 16742 37 100.0 34 ..................................... AAAAAATCCGGCCATTTTTATTAAGTTTGTACAC 16671 37 100.0 33 ..................................... ATTCATGATCTGAGATGATCGACGCGGATCTTC 16601 37 100.0 39 ..................................... TAGCTACACTAGGCTTGATCCCCGCTTCACTACTTTTTA 16525 37 100.0 40 ..................................... CCTGCCTGAACGCAACGGGTGAAATTTACTTAATTACCCG 16448 37 100.0 34 ..................................... TTATCAGACTTCTGCTACTTTCTCATCAGGAAGT 16377 37 100.0 34 ..................................... CTAATCAACTCAGGTATTTACAAAATCAACAAAA 16306 37 100.0 34 ..................................... TTAGAGATGCAGAAAAAAACCCCCGATCAACGGA 16235 37 100.0 42 ..................................... TGAAGCGGAACTCGATAAAGAAAAAGTAGCGGCTACTACCAA 16156 37 100.0 34 ..................................... ATGTGAGTCGGGTACAATTCCAAATAATTCAATT 16085 37 100.0 39 ..................................... TTGTAATTACTGTTTTTACTGTTTTTGGCGTTCATTCTC 16009 37 100.0 34 ..................................... GGTATCGGAACTGGGCGAACTGATTGGGAGGGGG 15938 37 100.0 34 ..................................... TCTCCCAAAGCAATTGACCCTGTTCGGAAGACAC 15867 37 100.0 36 ..................................... GATTGTCGAACGGTGTGAGAAAAGTCTTCAACCAAA 15794 37 100.0 39 ..................................... TATTCCTTTGAACTTCTTGATTTGGTTGTCAATTGTCTC 15718 37 100.0 35 ..................................... CGATAGCACCGCCACACAAAATGCCACCAACAAAA 15646 37 100.0 38 ..................................... TACAGACTCGGAAAGTTGACGGGCTTGGATTATTTCAG 15571 37 100.0 35 ..................................... ACGTTCGCCCAAACTTCGGAGGTGGCTGCATTCTT 15499 37 100.0 34 ..................................... ACCACAATCCAACGACTACAACTAACATTACTTG 15428 37 100.0 35 ..................................... AAATTTACTCTTTTTCTGTAAGTAAAACCGTAGGT 15356 37 100.0 39 ..................................... AAGAAATAGAGCGATCACGGCGTAAACATCGAGGTGAAA 15280 37 100.0 40 ..................................... GTATGGGATATAGATCGTGAGGTTGAGCGTATTTTAGAGT 15203 37 100.0 35 ..................................... GTGAAAAAAAAGTGGTGATAATCAGGCGCCCAATC 15131 37 100.0 34 ..................................... TTTAGCATTAGCAGGTTCGGGTTCGTCATCGGGT 15060 37 100.0 37 ..................................... ACGGGGACGAGGAAATTACCCTCTACATTCTCTGCAA 14986 37 100.0 36 ..................................... CACGATTACCGAACAACAGGCAATGAACTCCCTGTT 14913 37 100.0 33 ..................................... ACATATTTACCTGCGGGAAAGCAAACCACAACC 14843 37 100.0 46 ..................................... GAGAGACCGCCCCCCTTTTTACGCCTACTCACCGGAGGAAGACATC 14760 37 100.0 33 ..................................... CAAACTTAAACGGCTCCATTGCCTTTAGGTAGG 14690 37 100.0 33 ..................................... AATTAAGGGAATTAATTCTCGCTCCAGCATCGC 14620 37 100.0 41 ..................................... GTGAGACTCTTAACTTACCTAAGCAGCAATGGCTCAACCGG 14542 37 100.0 35 ..................................... AGCCTACGCGCTTTTGATAGATTAGTATTCTTAGG 14470 37 100.0 34 ..................................... TATTAAGTGGTAAAGGAGGCACTGGAATTAATGG 14399 37 100.0 42 ..................................... GCATCTTGGCTTGATGACAGAAGCAGCACAGGAAAAAATATC 14320 37 100.0 34 ..................................... AACCCCTAGCCGCAGAACCTACGATCAGTAACGA 14249 37 100.0 38 ..................................... TAATTATTGAACTAAAGGAACTAACGAAGTGGCTAATA 14174 37 100.0 34 ..................................... CCGCCGTAAGCATCTGTAGTGTTTTCCACATTGG 14103 37 100.0 36 ..................................... ACAATTTCGTAGCGGAACGTATGGGTGTAGGTATTG 14030 37 100.0 33 ..................................... AATTGAATCACCAAACTCCAACGGTTGTGATGA 13960 37 100.0 36 ..................................... ATTTGTGGGAGTAAAGCCCCGTTGAGTTGGGGCTGG 13887 37 100.0 34 ..................................... AAACGCTTTGATTTTGTTCAGGAACGCCTCACCC 13816 37 100.0 35 ..................................... GCATCCAATACTCTGAAGGTATTCAGAGTAGGAAT 13744 37 100.0 34 ..................................... TATTTGGCGGCCGCTGCAAAAAAGCCGAAGTCAG 13673 37 100.0 40 ..................................... TACAATGATTGCCCAGGCTGTAAATGAACTCATGCCTGAG 13596 37 100.0 35 ..................................... TGATTTCAGTAAAATCAACTTTCTAGAGAGAATCA 13524 37 100.0 34 ..................................... TAAAGTTTCACTACCGCTCTGAATCCCCAAGCGC 13453 37 100.0 35 ..................................... CGTTCGGGAGATCAACGGGGGCCTCAAATTCTCAG 13381 37 97.3 35 ........G............................ TACAATTTGTCCGGTTCGGCATTGGAATTCAGCAG 13309 37 97.3 45 ........G............................ CAAAGGGAATTTAATCCCAGTCCCGTTGGGGGAATTGCACCCCCA 13227 37 97.3 37 ........G............................ AATGGAACGCACGAACTAAGAGATTGTCGTGAAGATC 13153 37 97.3 39 ........G............................ AATAAGCCTTATCTCAACAGAATATGTCTCACGCCACTT 13077 37 97.3 33 ........G............................ CTTTGTCTCCTGGCGAGATCAATAGTTAGCTTG 13007 37 97.3 34 ........G............................ CTGGGATTTATTTCTTACAACGAAAGAGGAGAAG 12936 37 97.3 33 ........G............................ TGGATATAAATCGACCACTCTCCACCCCCTAAT 12866 37 97.3 34 ........G............................ GGTAATTCTGCAAATTCCGATTCAATCAACCATT 12795 37 97.3 34 ........G............................ GCAAGGGATGTAAAGGTTGTATCTGTTAATCCGC 12724 37 97.3 34 ........G............................ TGAGCCAGATGTGATTCAATCCGCTCAAGTTAAA 12653 37 97.3 36 ........G............................ TCAAGAATCCAGAGACCAACGTTTTTAGCTTCTCCA 12580 37 97.3 33 ........G............................ GAATGGCACGGCGTTTATCCTTATGGCGGGGAA 12510 37 97.3 39 ........G............................ AAGGGCTTTTAGTCGTTGATCAATTGAATAATGCCTGTT 12434 37 97.3 34 ........G............................ ACATAAGCTTCGCCCTTTAACTTATCGCCTGCAA 12363 37 97.3 34 ........G............................ TAACCTTTCTGGCGAGGGAGTTGGCTTCTCTTGG 12292 37 97.3 33 ........G............................ ATAAAAAATTGGCGAAAACATTAGGATAAATAG 12222 37 97.3 40 ........G............................ TTCTAAGTGATCCTCTACTTGTAGTAAATCTACTTTCATT 12145 37 97.3 36 ........G............................ ATAAAAAATTGGCGAAAACATTAGGATAAATAGCCT 12072 37 97.3 38 ........G............................ TGAATATCCTGTTATTGTTCCTTTTTCATAGTCTGATA 11997 37 97.3 31 ........G............................ AACATTAAATCACGAGCCTCCCTCCCATAAG 11929 37 97.3 39 ........G............................ TGTATTTGGCTAAAGCCTCTTTATAGGCTTTATTTCCTC 11853 37 97.3 34 ........G............................ TAATGAAGAACGCCCGAATATCCTGACAAACCTT 11782 37 97.3 42 ........G............................ GCGGATCATGTCGTACCTGGCAGGGCAACTGTGGTTCCACCA 11703 37 97.3 42 ........G............................ CATGACCGACGCAGAGATTCGACATTTAACCTGTGGGGTTAA 11624 37 97.3 34 ........G............................ ATGATGATGAAGATGATAACAATGATGATGATGA 11553 37 97.3 35 ........G............................ AACGCGACTGCTGTGGCTAAACAATTAATAGAATT 11481 37 97.3 35 ........G............................ GAGTTAACAAGCAAGGTTCGGCTGTTGGGTTCTAG 11409 37 97.3 40 ........G............................ TTAAAGCCTTGGGAGCAACCGCCGAAGCTTCTTTGTTACA 11332 37 97.3 35 ........G............................ TATTTTGAAGCCTTTAAAATACTGTGCGATCGCAG 11260 37 97.3 35 ........G............................ AATCATCCGCAAGTTTAATCAGCAGTTAAACTCAG 11188 37 97.3 32 ........G............................ CTTCTATTGGATAGTCTGCCCATGCCTGCCCT 11119 37 97.3 40 ........G............................ GCTTGGATAAATTAAAACTCGATAAGCGATCGCAGTCCGA 11042 37 100.0 36 ..................................... TAAAAGCATTCCTAGTGCTTCTGCGGCTGTCCAGTC 10969 37 100.0 34 ..................................... TCCCGACAGGTGTGAGTTTCATCCAGTTTGACCA 10898 37 100.0 40 ..................................... GCCGATTACGCTATCGAGCAAAAAGATCATCGCTTTTCAA 10821 37 100.0 38 ..................................... GTTTGTTTATGAAGATAAAACAAACCTGAAATAGCCGA 10746 37 100.0 41 ..................................... TTTGTGAATCGTTTGTTTAGATGCTCCATAGGCAATCAATC 10668 37 100.0 34 ..................................... CAAAAAGGGAACAGCCAAAGCGAAGGAAATATCA 10597 37 100.0 34 ..................................... GTAGAACGATCGGCACTCCAGATGCAAAAACAGC 10526 37 100.0 34 ..................................... TTGAGCCTCCATAGGCAATTAGTCTATTAGGAGT 10455 37 100.0 34 ..................................... TTCTTTTTTTCAAGCTGATCTAATCTCTCTAGTA 10384 37 100.0 34 ..................................... AACGGAATTCCGAGGCTTGAATGGAGCAGTAAAA 10313 37 100.0 42 ..................................... TTTATGGTGGAATAAACCTAAATTTGTAAATAACTATGTATG 10234 37 100.0 41 ..................................... GAATGGCTTTTGAAAGTTTAGCTTTCTAAAGATGCCCTCAA 10156 37 100.0 33 ..................................... GATGAGAAACGCAAGCTGTTCTATGAAACTTAC 10086 37 100.0 34 ..................................... ACTCTGACTAACGGGATAGAATACTCTATTTCTC 10015 37 100.0 35 ..................................... TAGAACAAAATGCAACAAAACGACAAAACTCAACA 9943 37 100.0 42 ..................................... GGAGCATTAGCGGGAGTCGGTATATTGGCAAACGCTGCTGTA 9864 37 100.0 33 ..................................... ATGATGAAGCCATACAAAGTTTACCGGAAACGG 9794 37 100.0 32 ..................................... ATAAGCTTCTGGTGGTAGAGTCCATGCTTGAG 9725 37 100.0 34 ..................................... TCACCCGTGGAATGAGAAGATGGCTATTTTATGG 9654 37 100.0 39 ..................................... TGCTGCTTGCGCCAATATCATAAGTAGTTGCGCTTGCTG 9578 37 100.0 47 ..................................... TGAAAACTAATGAGCATTACCGCTTAGAGGATTTGCCTGATTCACAG 9494 37 100.0 40 ..................................... ACTTTTCAACAAGTTCAAGATTACTTAAATTATGACCCAA 9417 37 100.0 33 ..................................... ATCCCAATCCGGTTTGCTAACATCCTCATCTAA 9347 37 100.0 37 ..................................... ACGGAATTATAAGCGCTACCTATGCAGAACAGTTAAT 9273 37 100.0 33 ..................................... AGCCCTGGCCTGAAAGATTAGAAATCTGTTCAA 9203 37 100.0 33 ..................................... AAACAATGAAGATAACAGTGTACACTCTAACAA 9133 37 100.0 39 ..................................... TCCCCAAAACAGCCTAATTTTAGCTAGGGTGATTGTAGG 9057 37 100.0 34 ..................................... GTTGAGTTTGAGGGGGCAACAGCCGCTAATACGA 8986 37 100.0 36 ..................................... ATAAGTGCTTTGCGAACATCCACAAAATCAACAGCA 8913 37 100.0 34 ..................................... GCCGTCCATCTCGATTCGCTCATCGGTATCTCTG 8842 37 100.0 45 ..................................... CTTCAACATTGCTGATCTTGATGTCAATTTGGTTGAAGCGTTCTT 8760 37 100.0 35 ..................................... CTGCTTTGATGACTTGTTCGATTAGCCAGAAACGA 8688 37 100.0 34 ..................................... CCCCCTTGGTTTACTGGCATTCTTCTGATGTCGA 8617 37 100.0 41 ..................................... ACAAACTAAGCAGTAGTGACCTGTAACAACAGTTGCGGGTA 8539 37 100.0 35 ..................................... TACAGTTAGATAGCGGGTATCATTCCAGTTTGAAA 8467 37 100.0 34 ..................................... AGATTTATTCTCGGTTTCTGCCAGGAAACCGAAG 8396 37 100.0 35 ..................................... GTAGCCGTTCCCGCTCGGGTCTGACATCGTTAATT 8324 37 100.0 34 ..................................... GGGGGCAGTTTGGGAAAAAGACTAGGCATTCCTA 8253 37 100.0 34 ..................................... GACTTCGAGAATGATTGCATCACAATTAATTGTG 8182 37 100.0 34 ..................................... CTGAAACAAACCCAGAAGATCTTGCTGCGACCAA 8111 37 100.0 34 ..................................... CCGATCACCCCCGCGAAGTTTTGAACTGATGGGG 8040 37 100.0 34 ..................................... CCAAACTATGGTGATAAAGGCGCTCAGTATCAGG 7969 37 100.0 34 ..................................... ATGGTGGGATAAATTTTGAGAATCTGGCAATTGA 7898 37 100.0 34 ..................................... TAATCCAATCGGTTAGGATCTCGCGTGCTAGATG 7827 37 100.0 35 ..................................... CGAGTTGATGCAATTTTTTTATCCTTTTCAAATTG 7755 37 100.0 37 ..................................... CGGTGGCGAGTCGCTATTCAGTTTTCAAGGTTCAAAG 7681 37 100.0 34 ..................................... TTAGAATATAACGCTTATATTCCCGAGAATGAGT 7610 37 100.0 38 ..................................... AAGCTAAATATTTAAGATTTGCTCATACTTTTCTACTT 7535 37 100.0 39 ..................................... GGCTTGGAGATACCCATCATCTGACAAATTTTACCAATG 7459 37 100.0 34 ..................................... AAACAAAGGCTGGCTGCTATCTTCTCGGGGAAAA 7388 37 100.0 35 ..................................... AGCAGAAAAGACCCCGAAGAAACAACGACATTAAG 7316 37 100.0 35 ..................................... AAACAAAGGGGGAATTAACTCCCCCAACACTTCAC 7244 37 100.0 42 ..................................... AACCCATCTTTGAAACTTGAAAAACGCGAGTGTAGTTCAATT 7165 37 100.0 35 ..................................... GAATTGCTCCGAGCAAAAGGAATTGAGATTGACTT 7093 37 100.0 34 ..................................... GTCGCATTCTTTTTTACTAATGTGACTTCCGAAG 7022 37 100.0 31 ..................................... TATCAGAAAGTCGAGGTGCAATCATTGGAAA 6954 37 100.0 37 ..................................... AGGTGACTCCATTTCGGGGGAGACCTTAAGGGCAGCC 6880 37 100.0 37 ..................................... TCTTCTACGATTGAGAAAAAGACTGTACACAGAAAAT 6806 37 100.0 42 ..................................... AGGTGTCGGAGTCGATAAGGTTCAACGCTAAAAGTTTCGCCG 6727 37 100.0 35 ..................................... ATCACTTGGGATGATCCATTTGGAGATGAGGACGG 6655 37 100.0 34 ..................................... ATTGTATTCCCCTTGATCAAAGAACCACATTTCT 6584 37 100.0 33 ..................................... AAACTATGGCTATATCTAGGCTGACAGGATTAG 6514 37 100.0 34 ..................................... CTGATGCGGACGTAATAGTACATTACAAATTCAA 6443 37 100.0 41 ..................................... TGGTATTTTCCCTTGCGGCAGATAGACGTATGCTGATGCGG 6365 37 100.0 35 ..................................... CTATTTTTGCAGAAAGTCGAAAGCGATTCCCTGAA 6293 37 100.0 34 ..................................... AAAACTTGCTATTCCAAGGATCTTCTAAATTGCT 6222 37 100.0 40 ..................................... TGAATCCCAGGCAATCCGTGAATACGTTCGGCGGCTGCCA 6145 37 100.0 33 ..................................... ACAGCAAGCCCCTTTTTACAGTGGTTCCCGCTA 6075 37 100.0 34 ..................................... ACGGATACGGATATCGATCCGAATTTCCTCAATG 6004 37 100.0 40 ..................................... TCAATTTTAATCCCTTGTCAGTCTGTTTAAAACCAAGATA 5927 37 100.0 39 ..................................... AACTGCTGCCGATTTAGCTGAACGGATTCGCGACTGTGC 5851 37 100.0 40 ..................................... ATAGCTTAAATAATCTTCAACTTCTTCAAAGCTAACCCAT 5774 37 100.0 40 ..................................... CGGGTTTTTAGCCGAGTTCATCTGAGTGAGGTGAAGCATC 5697 37 100.0 39 ..................................... CCAAGTTTGGCGTAACCAACACGCTGACCTTGTAAATAC 5621 37 100.0 40 ..................................... CATCTGCAACAGCGTTTCAGCTATTGAGTAGTAATCCCAA 5544 37 100.0 37 ..................................... ATCTGTAGAGTAACTGGGTTAGTCGGATGGTTATCTG 5470 37 100.0 43 ..................................... TGGAATCCCCCAACTGTTAGCATCAACTTTCACGCACCCACGA 5390 37 100.0 36 ..................................... TCCTTTGAGATGGATTGCCATTTTGAGTGACTCCTG 5317 37 100.0 35 ..................................... ATACAGAAAGAAGCCGATAAAATGTTAGACAAAGC 5245 37 100.0 36 ..................................... AACAAGTTCTAGTTTATCGGTTTTTACATTTAAACT 5172 37 100.0 34 ..................................... CAACCAATATTTAATTAAAACTACTATTGATGTT 5101 37 100.0 34 ..................................... CTTTGTGGCATTATTCCCCCCTGGGGAAGTTAAA 5030 37 100.0 35 ..................................... CCAATTTTTAAAGCAGCAATCAAACCCGTACTTGT 4958 37 100.0 34 ..................................... ATCAAAAAATGACTTGTTAGCCTGCCAGATTGTA 4887 37 100.0 37 ..................................... GGGGCAAAATCTGGATGCCCCGGAAGAATCAAGATAG 4813 37 100.0 33 ..................................... TGAAGAAGTGGCTAACAACTAATCCAGGCAATA 4743 37 100.0 35 ..................................... TGTTTACCCTTGGGGAGATACAGAACGGCGTCTTC 4671 37 100.0 33 ..................................... ATCTAAAAGAACAGATAGAACAGCGACTCAGTG 4601 37 100.0 34 ..................................... AAAAGCAAATGTTTAGCTCTAGAGATTTGAATTT 4530 37 100.0 40 ..................................... CATTCTCAATAGATTCTGTCGATACCGTTGGGGAAACGTG 4453 37 100.0 38 ..................................... AGAGATGAATGTAATGATGAGGATAAAGAACCTTCCCC 4378 37 100.0 35 ..................................... AACCGGTAAATTCTGCTTTTGTGCGATCGCCAAAT 4306 37 100.0 34 ..................................... ATATTCCCACCAATTCCAGGACAATCACTCACGA 4235 37 100.0 35 ..................................... GAAACTGATGGAAGTGATGGAACTTCTAGAATTCC 4163 37 100.0 40 ..................................... AAGAAATTGACTTTCCTAATATTGCCGAGTTTATGGCGGA 4086 37 100.0 34 ..................................... AGAGGATAATAAGCCGCAGGCATAAAATAAACAG 4015 37 100.0 36 ..................................... ATCACGGTGGGGAGAGACAGAGAAAAATTTAGGGTA 3942 37 100.0 33 ..................................... TTACTGAAAGGATATGGCGACACAACGAACCAT 3872 37 100.0 40 ..................................... AGAGACTCGATAATCGACCGAAAGCGATTCATACAATCAG 3795 37 100.0 34 ..................................... TTTCACCAACAACATCACCGTTTTTATCTAACTT 3724 37 100.0 34 ..................................... TGAAAATCCGTAAGTATTCAGAGTCACTAATAAT 3653 37 100.0 38 ..................................... ATGATAATTTCATCCGAAAGAATACAGCATCAGGAATG 3578 37 100.0 37 ..................................... CAAAATCATTGAGGATGACGAACACGGCACCGTAGAA 3504 37 100.0 34 ..................................... TTAAATGCTCCAAAAATCGAAGAATTACCCCAGA 3433 37 100.0 35 ..................................... TTTGATTTCAACCGAACTTAAACTATATTCTCTAT 3361 37 100.0 34 ..................................... TCTCTACTGGAGTTACAGAAGAAAGCCAATAACC 3290 37 100.0 40 ..................................... GAGAAAATTGAAGACAAGAGAATTCAAGATTTTACTGAAA 3213 37 100.0 39 ..................................... AATTCCAAAAGCAAATCCTTCCTGCCATTGCTCAAACCA 3137 37 100.0 41 ..................................... TCCTTGCCCGAGGCTTATGCTGCTGCTGAGGAGGAATGCTA 3059 37 100.0 34 ..................................... AATTGCTCCCGGTTTATAAGTCGCGGTGAAGCAA 2988 37 100.0 35 ..................................... TTCTATTTTTCCGATACGGCTAGGGAGCGACCCTA 2916 37 100.0 36 ..................................... CGGAGGCGTGACACTTCTGGCAGGTTCGGCTGGAAG 2843 37 100.0 38 ..................................... GCTAAGTCTTGAAATATCTCAGGCCCCGCTTCTTTCAA 2768 37 100.0 36 ..................................... GCCGATTATGTGAGCTTGCGAAGATCGATATCTATT 2695 37 100.0 34 ..................................... TAAAAATAGGGCAGGATTAATGAAATATGCAATT 2624 37 100.0 34 ..................................... CATTTATTGACTTTATCTACGAAGGAGCCTTAAT 2553 37 100.0 32 ..................................... TTAGGCAGCAGAACCATTAACTTAATGCCAAG 2484 37 100.0 35 ..................................... CGGTCAAAGCCCAAGCCGATCACCAATGCAATCAG 2412 37 100.0 33 ..................................... GTGATGCAGAACAACCACCAACGCCGCCGCCGG 2342 37 100.0 35 ..................................... TCAATCCTTTTGTGTTTTTCATCTTTATAATGCAA 2270 37 100.0 40 ..................................... GAATTTGCAAATTCGACTTGCTTACATGATGACTCGAATG 2193 37 100.0 34 ..................................... AGGTAAAATCCCCTGTGCAACACTCCTATCACTA 2122 37 100.0 35 ..................................... GCTAAGTTCGGCGACCTCAGAAAGAAATCTACATG 2050 37 100.0 33 ..................................... AAAGTAAGTTCTACCAGTAGTGAACTGGCTCAA 1980 37 100.0 35 ..................................... GAATTAAAAAGTTTGCTTAACGTTCCTTACTTCAG 1908 37 100.0 37 ..................................... TAATTGAGACTCCATTCTCTGTCGAAGCTAACGAAGA 1834 37 100.0 34 ..................................... AGCTGTATTGACTCTGCGGGATAGGCAGGGAGAT 1763 37 100.0 38 ..................................... CAAACGCTTGAATCTCTCGGAATAACTAACAAACTCAA 1688 37 100.0 35 ..................................... TAGGTACTTTTTAACCAGTTAATTTTGATTGTAAA 1616 37 100.0 34 ..................................... CAAGGAAGAGTTGATATTCAATCTTAGTAGTGTA 1545 37 100.0 34 ..................................... GAAAAATACTCAGGAGAAGCTTATAGACTGTGGT 1474 37 100.0 35 ..................................... AGAAACGGCAGGCGCGGACGTTCCTAGAGAGTCTA 1402 37 100.0 36 ..................................... TATGACCCTAACGACTTTTCTCAAGAGTTCTATCGC 1329 37 100.0 34 ..................................... CTTAGAGGATACCTTTGCAGCCCTAAGAACTGGG 1258 37 100.0 35 ..................................... ATTGTAAGATCAAGTGAGCCGATAATCTTAGATGG 1186 37 100.0 36 ..................................... AAGCGGAAGCTGAAGAAACTGTATCAGACAAACTGT 1113 37 100.0 33 ..................................... GAGGCGGGAGCAAATTAGATGAATTTTTAGATG 1043 37 100.0 42 ..................................... GCTCCCCTGAGTTCGACATAACTTCCCCAAGTTGTGGCAGAA 964 37 100.0 37 ..................................... AATAGCGTGAATGGGTTTTTCTCCCCATACTCCCACC 890 37 100.0 38 ..................................... TACCTAGCTCTTTATCAAAGTTCCATTGAACTATTAAC 815 37 100.0 33 ..................................... AAAACAGGCACAATCTCAAGCTCAACTGCAATC 745 37 100.0 37 ..................................... TTTATTAGTGACCATACGAGCATTAATGTAATGCCGT 671 37 100.0 34 ..................................... AAGATTAATGAAATATGTAATTCGACCGTGGAGC 600 37 100.0 35 ..................................... GGAACCGGGAAAGGAATTGAAACAAACTTCGGAGA 528 37 100.0 31 ..................................... CGCTAGTAATCCCACACCGATCCTTCCCAGA 460 37 100.0 34 ..................................... AATCGTGATTCATGGGGTAGTGTAGGCAAAATGC 389 37 100.0 40 ..................................... GGATACCATCCGGGCTGAATCATTTACAGAAAGGGCGATA 312 37 100.0 41 ..................................... AACCCATCTTTTAGGGATTTTAATTGGGTATTGATCGGCAG 234 37 100.0 33 ..................................... TGGGGATGAGGATAGCTCAGAGGATAACTCCGA 164 37 100.0 34 ..................................... GTAATCTCTGATGATGATGATGATGATGAGGTTG 93 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 243 37 99.6 36 GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Left flank : TAAATTGTAAGATCACAT # Right flank : CTAAAGAATCCCGCTTTTTTATGCTAGAATAAATCTGTTACAATTAACAAGAATCCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 976-1452 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000291.1 Limnoraphis robusta CS-951 contig291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 976 38 100.0 36 ...................................... GAGAGTTTCATCCTTCTAAGGGTTCCGATTTTCCCG 1050 38 100.0 38 ...................................... TCCTCGTTTATTGTCGAGTCCACACAATCAGCCTTGTT 1126 38 100.0 35 ...................................... ATTCAATTTCTCTTTTCTTCATAAAATGTTTAGAA 1199 38 100.0 33 ...................................... AGCCAAATTTTAGACGCCCTCGTTCAGGCTCAA 1270 38 100.0 34 ...................................... CCTCGACCTCATCCCATTCTTCTTGCTGATCAAC 1342 38 97.4 35 T..................................... CTGAATATCTGGAAGGTTACGGGCTTTTGGCGACA 1415 38 97.4 0 ................A..................... | ========== ====== ====== ====== ====================================== ====================================== ================== 7 38 99.3 35 GCTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Left flank : AGTTACAGGTTGTTCGAGACAAAATAGATGCTTGTAAGCCTTTGATAGCAAGGGTTTCAGAGTTTACAAAAAGGACAAGATTAAATTTTTCAGTAGGTTCTTAGGTTATTGTGAGGAAGTGCCTTTGACATACTCCCCTTTCTTTAGAAATGGGGAGTATGTCAAAGGTTATTGATACTCATGGGTTACGGTGAACCAGCGCAGTCTTGGGGGTTCCCCGAAGAGTAAGACAGACCGCCCCACCGTGCGCGTTTTCCCGCCCTCGCAGACGGCACGAAAGCCCGCGTATTGTCGGCCATCTAAATTTACCAACTTTATTATTCAACCAAAATTGAGTTTTGAGGATCGGCTAAGATATGCTCTTTATAAATTTACCAACTTTATTTTTCCGGCTTGTGTTGAGGTGAACGAAAAATTAGGCATTTGAGGGAGAAAAATTTACTAACTTTATTATTTCACTACAACAGCCACCTAGCCCTTGAACCATATTTCCTAACTCT # Right flank : CATTGTGAGTCGTTAATGAATAGTTAGAATGTTGCTTACAGTTATCTCTGACAATTGTCACAATGTCCACAACCCATGAACTCAGCTTCTTTATTAAAACCAAAAGCCTCCAACAAAAACCGCCAACGACATTGACGAGTATTTAGATATTGCGTCATTTGTTTAATGGCTTGGGTATTGTGATCGGGGAACGCAACAGAAGTTGAATTTATTATATAATGAAACGGATCTTTCCAAGTTAACTGTCCCGAACTATGCAACACTGAAAGCGCGGTTGCACTGTTGCGAAACTGACGAGAGATTTCCTCTATTTCTCCTTGTTTTGGTAATTTTTTAACAAGTTGATTCGCCTGTTGATATTGTTGTCGCCAATTGTCTTGTAAATATTGACGGCGTTGTTTGTCTTCAGGATACAGCCACCCCGTCGGTTCACTGACTAATGTTAAAGCAAAAGCAGGCTTTCCATCCCGTCCCGCCCGTCCGACTTCTTGCAAATATTC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTCCAACATTAAATTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 59185-61070 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000355.1 Limnoraphis robusta CS-951 contig355, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 59185 36 100.0 38 .................................... CTCCGCTAAAAGCAGTTAGGAAGGTGTGTCGTATAGTT 59259 36 100.0 37 .................................... TGGCATTTGTTTCATTGGCTGTCTCCTAAATTTAATT 59332 36 100.0 39 .................................... ATCAATTCGAGCTTTAATTATCGGAAGTTCACAGTGTAG 59407 36 100.0 44 .................................... TTGATCGGGAGTCATTTGATTGATTTCCGATTCCATTGCTTTTA 59487 36 100.0 41 .................................... TTCGATCATTTCTTGATGCTAACCACGATAATAATTCGCTG 59564 36 100.0 35 .................................... TATGTCTATCGGAAATATTGCAGTCAACAAACCGT 59635 36 100.0 37 .................................... AATACAACTTTAGAATTAGCAGGGGCGCAATACACCG 59708 36 100.0 38 .................................... AAGGCTACAACAACTAGAATTACAATCAACCCAACCAT 59782 36 100.0 37 .................................... AAACACATTGATAAACGCGCCTGTAGTGCTATAGATA 59855 36 100.0 35 .................................... CAAGTTTTAGTGCAATCTTCAGACCAAATAAGCAG 59926 36 100.0 39 .................................... ACAGAGCGGTAAATGGAGACAATCAAATTAGCCTTGCAA 60001 36 100.0 35 .................................... AAGCTCAGGCTGGAAATCCACTTGTCCCAAAGAGT 60072 36 100.0 37 .................................... TTGGCCAGGGAAAATAAAACCATTGCCTGAGATTCGT 60145 36 100.0 36 .................................... ATTTTATTGATAAAACTTTTTTCCTGTAGTCAGAGT 60217 36 100.0 41 .................................... CTAATTAAATGGACGTTTTGACTATGGCAAGAAAGAAAATA 60294 36 100.0 36 .................................... CTAATCATGTCTTTAATGTCGTCCCAACTACCACCT 60366 36 100.0 37 .................................... ACATGAATTCGTCCGTTAGAACCTTTGCGTGTATGTT 60439 36 100.0 38 .................................... CTGAATCGCCTCGGGATTTGCTGGCATTTTAGAAGCAG 60513 36 100.0 40 .................................... CAAACACTGCTAAATAAAACTACAATCGCGAGAACAAGGG 60589 36 100.0 38 .................................... CCGACGATTAACGACTCCAATACAGACAGGCTCCCCGC 60663 36 100.0 35 .................................... TTTCCGGGTCAACTTTTGCGCTGTCTAACGTCGGA 60734 36 100.0 38 .................................... CAAGATCTCTTCATCGTCCCCAAATATTGCGATCGCAG 60808 36 100.0 41 .................................... TGCTGCTTCATGCTCTAAAATCATTTTCGTGTTGTGCCGAA 60885 36 100.0 40 .................................... AAATAACGGTAGAAATCGTACTCGGAATTAAATCCGTCAG 60961 36 100.0 39 .................................... AAAATAGCTTCATATGCTTGAGAAGTCGCTATTTTTTGA 61036 35 91.7 0 .......A.................-.......T.. | ========== ====== ====== ====== ==================================== ============================================ ================== 26 36 99.7 38 GTAGCGACTTTCATTAGAAAGAAAAGGTGTTGAAAC # Left flank : GTTCATAAAGTTTGTAGCACTAATGCGAAGGATAAACCGAGTTGGTGTGGAGTTATTGATGATGAAGATAGCAAAAAGAAGGGTAAAAAACCTCGACCTTCGGGTTATGCCGTGCGACAATATGAGAGTTTCTGTTTGCTGACAGTATTCGATCCCAATGTTGAAGAAACTCTCCGCCAAAAACATTTTACTCGCATTTGGCCGTCCCAATAATCGGGTGATCTTTTAAGGATAGGGGTGAATAAGCTGTTATTGACATGACCGCAAACCCCTGACACCGGACTCCTGATCCGGATTAATTTCTCTGAGTTGACAATTTTTGCGAGGGTCAGGCAAAATGGCTGAAAGGCTGATTGTTTCGTTGAGAGCCTCGATATCCCTCCCTGTAAGGGTTTCAGGTTGTTGGCTAGACCGTTTTACCCCAATGCGCGAGGCTGTTTTCAGTACCCCTCGCAAACTGGGTCTAGACACAAGGCAGGGTAAGGGGTTTAAATAGAGGG # Right flank : CCGCAAAAAAATAAAGGCACAGTCTAACCGTGCCTTTTCTCTATAACTGAAGTAGATTTTAGTAAAATTGGTAAAATTGAACGACTTTAAGGTTCAGTTTTACTATTTTTTGCATCCTTGAGTCGCATAGTCCAAAATTGAATTGTATCGGCAATTTCAATTAACAAATCTGTCAACAAAACCTGTTCATTGAAATTCAAATTTTGAAAACGTTCCTGAAACTCATCCGTTGTCATATTGGAGCGAATGTTTAAATCATTACCAACAATTTTACATAAAACCACCCGTGCAACACCCCAAGCAAAATAACGCCTTTGTTCGTCCGAACCTTCATTAGCATCGGGTATTTCTCCATTTAATAACCGGAGAGAACGAGACATCGCCCAAAAGCGTACAACGCCCCAATTGGAGACATAATCAGCAATACCACTGGCCGCACCTTGCCACTGTTTAATTTGCTCAATTGAGCCTGCACCCGCCTTGAGGAGTTGAAAAACTTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACTTTCATTAGAAAGAAAAGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16098-18451 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000252.1 Limnoraphis robusta CS-951 contig252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 16098 36 100.0 35 .................................... TTCAATCGAATTGTACATCGTTGCTGCAACGGCAG 16169 36 100.0 39 .................................... GATCTCTGCTTTTGGAGATCCTAGATCCGCTTTGATGAC 16244 36 100.0 38 .................................... AAACTGTGTTTGGTTTGATGACTTCAAGAAAAATTCAG 16318 36 100.0 44 .................................... CGCCCCTCCTTCGCTCTGTGTCAAATTAACTCCATTACTAGAAT 16398 36 100.0 40 .................................... CTTACTTCTAGATATCATCAATCGCCTATTGGAAGTGGAA 16474 36 100.0 37 .................................... GGCAATGAAGCCGTTTAGGTTTGGGCTGAAAAATCAA 16547 36 100.0 41 .................................... TACTTCTCACGGCGTCCCCACAATTGCACTGCTAGGGGTTG 16624 36 100.0 40 .................................... ATCGAAAAAATACACGTTGTATGTGAAAGCAGATTACAAA 16700 36 100.0 41 .................................... TACGAGAAAATCTGCTCATATTTTGACAGTTTCGATTTAAC 16777 36 100.0 36 .................................... TTCCTCTTTTAGCGTTTTCGGTGCAAAACACAAAGA 16849 36 100.0 36 .................................... GTTGTTTACAACGTCACAACGAAAACCTCCTCCCTA 16921 36 100.0 41 .................................... TGGGATCTATCCAAATCCTGCGTCTGTTTGATGCAAGATTT 16998 36 100.0 42 .................................... CAACGGACTTGAAGTTTTAATCGACCCCAAGACTAAAGAGAT 17076 36 100.0 36 .................................... TATTCAGAAGGCAGTTGAGCGAACAAAAGAAGCCTA 17148 36 100.0 41 .................................... TATGAAAAACTGGTGATGAAGCTTGACCGAGTAAAAAATAA 17225 36 100.0 38 .................................... TATTTACGGGGATTATCCAGGGGCGTGCTGTCCGGCAA 17299 36 100.0 40 .................................... ACTGGGCTTGCGGCTCCCCGATGAAAAGCTGGCTAGGATA 17375 36 100.0 36 .................................... CTGGTTTAAAGAGGAGTACGGAGGTATCTGTATAGA 17447 36 100.0 39 .................................... ATCAATTGTTTAAAGAAGGGGACATTTTAACTGTTGTTG 17522 36 97.2 39 ...................C................ AATTCTTGACGCATTGTTGGGTTTTGCTAATGGTGATAT 17597 36 97.2 37 .................................A.. CAATAGAGCAGAACCCGAGCCGTGAGTGGTTCAAGTG 17670 36 97.2 39 ...................C................ TAGGTATGTCACAGATCAAAGCAACATGAACGCCAACAA 17745 36 97.2 39 ...................C................ AAAGAAAATCACCCTGACTGGCTTCATCTTCTTTATGAT 17820 36 97.2 42 ...................C................ GAGAAAAAAGTAAAGTTTGATTGGCTGGGTTTTACGATTCTA 17898 36 97.2 40 ...................C................ ATCTCAAGCTTCTTGAATATTGACATTCGGCTTATTTCTC 17974 36 97.2 39 ...................C................ TAGGTATGTCACAGATCAAAGCAACATGAACGCCAACAA 18049 36 97.2 36 ...................C................ ACGAGTCGTAAATTGGTTGATGAGACAGGGTATTTT 18121 36 97.2 35 ...................C................ TAAGCTAGATCGGCATCTAACGCCGATCTTTTCCC 18192 36 97.2 41 ...................C................ AAGTTCCCAGGAGGGAGTCGGTTCATCAAATCAGAAATCAG 18269 36 97.2 37 ...................C................ CAGATGTGCGAAAAATAGAAGCTCTCATGTTAGCCAT 18342 36 100.0 38 .................................... TTAGAAGAAATGAGTCAAGATCACGATATTACGGATCT 18416 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 32 36 99.0 39 GTTTCCATTAATTCCACTATTCCGAAGAATAGCGAC # Left flank : GTTTGAATGATATTGATTTGAATCGGTGGATTGTAGGGTTTGGAGGTCATGTTAAGGTAATCCAACCTCCAGAATTGATTCTAAAAATTCAAACGATGGGTGAACAAATTTATAGGATTTATAATCCCTAAGTTTTGAGCATATTTTTCTTAAGCCTCACCCCCAAGTTGGCTCTTTAAACTACTTATTAAAATTAAACCCCCTTTCTGGATAAGAGAGGGGGAAATTAGCTATTTTTGCGTGATTTTTTTAGTCATCATAGGGACTTCCCCAGTCTACGGGTTCCTCATTAGTTCTGCGCTTTAACTCAATACGATTCGCATAAAATCTGCGCGGAGGCGGTGAGGGTTTTGGAGGTGATGGCCAAAAGAATGACATTAATAAAACCACTGCGATCGCTAATCCTACTCCGTCCAACTTTGTTCTCCCTGATATTAGTTTTCTTATATTAGGATGAACTATTTTTTGAGGATAGAGAAGACTTTTGATGCGAACAACGA # Right flank : CTCCTCTCTATTAAAACCCTTATTCAGTCGGATGTCTAGAGGGGGTTTACGAGGCTGAAGAAAATCAAGAGAATTTTTGCCTCACGTTCGCCCAAGTAAATCGCTGAAATCCTTACGGAATGTTCTATCGAGGCTCCCAACGAAATTCCGTCAATACAGCCATTTTTCCTGAGCCTCGCTAAACAATTATCTGCCGTCCGGAGAAGACCCTCACTTTTAATGATGGGATGAATCCGGACAATCTTGATTTTGAACATAGACTTTAAGTTGTTCAATTGTAACGCCACCACAACTCGCAACAAAATAAGAACCTGTCCATAGAACTCGTTTCCCGTAAGTTTGAGCAAGTTCAGCTTCAAACTCTCGCCACAGTGTTTTAGATGCTGTGGCTTTTAGATTAGCGATTAAGTTGCGTCGCGGGTTTGTGTGGAGGATAGCTAAGTAGTAAATGAACATGGTCTGATTCCCCGTTAAATTCTATAAGCTGAGAATCCCATTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCCACTATTCCGAAGAATAGCGAC # Alternate repeat : GTTTCCATTAATTCCACTACTCCGAAGAATAGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 2 32106-54537 **** Predicted by CRISPRDetect 2.4 *** >NZ_LATL02000252.1 Limnoraphis robusta CS-951 contig252, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 32106 37 100.0 42 ..................................... CTAAGGGTGTTTAACCCAGTCCCGTTGGGGGGAATTGCACCC 32185 37 100.0 35 ..................................... TCGCTAGAGACAAAGCAATATTCAACTCATTTAAT 32257 37 100.0 34 ..................................... GATTGCCTGATAATCCCCAAGCCATCAAACGAAA 32328 37 100.0 34 ..................................... AACTCCATTGTTGACCGATCACTTTGATTGCCTC 32399 37 100.0 36 ..................................... CAAAGGTAAGAAGTGGGCGGTTGTTAATTTAGTCAG 32472 37 100.0 33 ..................................... CAACGAAAAAAGATTGAATATCAAACGAGCATT 32542 37 100.0 41 ..................................... TCTTTAAAGCGATCGCGCTTACTTCTCACGAAGTCCCGACT 32620 37 100.0 41 ..................................... AACAGATGAACCTCTGAAAATTGCTGTTTAGAGATCGCCAA 32698 37 100.0 33 ..................................... AACTCAGCGATCGCAATATGGATCATAGGCTCT 32768 37 100.0 35 ..................................... TCGGATTTCTGCTCTGGCGATCGCTTCTTTCATCT 32840 37 100.0 40 ..................................... TGATTAGAATCCCCCTCACCGGGGAGGGGGAGGTAAAGGA 32917 37 100.0 35 ..................................... CTGATCCGTTTCCTGCCATTCAAAGTTGTATAGGA 32989 37 100.0 35 ..................................... TCAGATTTAATCTCGTCTAACTTCTCTGACAACTG 33061 37 100.0 34 ..................................... ATCCAACGCCGCAGTGATCGCGCTGTGCCTGATT 33132 37 100.0 44 ..................................... AAACAACGCCTAAGCTATGAGTTTCCGGCTAAGGCAAAAGTTAG 33213 37 100.0 39 ..................................... AATCAACACAGAAGACACCATTCAATCTTATTGTACCAT 33289 37 100.0 34 ..................................... CTTAGTAAGAAGATGAAGCGGGAACAACTCAGCA 33360 37 100.0 34 ..................................... CAATTTCTATCGGGTAAAGAGGTTTGCCGTTGAG 33431 37 100.0 41 ..................................... CAAGAAACATTAGCACTTCCATTAAATGTTTTACCAGTCGA 33509 37 100.0 35 ..................................... GAGAAGCTTTTGCTTAAATTCATCTGGCAAACCTG 33581 37 100.0 35 ..................................... AAGTTGCCCGACTAGAAGCCCTATTATCTGATACT 33653 37 100.0 38 ..................................... TTATTATCCTTACGATCTTCAACACCCCATTCAATCGA 33728 37 100.0 38 ..................................... AGGTTACGGGTAACTGTTGGGAGCTGAACAAGAAGGGT 33803 37 100.0 37 ..................................... AATAAATACTTTCATAGACTCTTGATATTTGTCGATC 33877 37 100.0 34 ..................................... CAAAAGCTGATGGGCCACAAGGACATCAGAAATA 33948 37 100.0 37 ..................................... CGGGAATTCCTGAAGCAATCGGGATTAGTCGGGTTTG 34022 37 100.0 33 ..................................... GATAGTAACACTAGAATTCGATTAGAAGTTGGG 34092 37 100.0 32 ..................................... TTCAGAACCGTATTACTTAGAACAACCAAACT 34161 37 100.0 35 ..................................... CAGTTTGAGCGAGCTTATTATAATGACGAGCAAAT 34233 37 100.0 40 ..................................... TACAATAACACATTCGTCTCAACTTTGTCACAAATTTCCG 34310 37 100.0 33 ..................................... GTAATGACTGAATTCGCTACTCAAGCTCCCATT 34380 37 100.0 32 ..................................... ACTAGATATCCTGTGATAATATGCCGTTCACC 34449 37 100.0 34 ..................................... AATCTCTTCACCTTTGTAGTTCACACCCTTACGA 34520 37 100.0 35 ..................................... TTACAGGAACCAAGGTAGAAATAGCCTTGATCCCC 34592 37 100.0 34 ..................................... CAATTGATCGCCAAGGGAGTATTTCAAGGTGATG 34663 37 100.0 41 ..................................... AAAAATGCTCTTAGCATTAGAACCCGATGTAGTTATCCTTG 34741 37 100.0 35 ..................................... TGAGTATCCCAAAGGATTGCAAGAATTTGTCTAAG 34813 37 100.0 34 ..................................... ACAGCACTTTGGTGGGTTTTGTCCACCAGTTGAT 34884 37 100.0 34 ..................................... AATGAGACGATTTTTTCAGCCTGTTCAATCATCA 34955 37 100.0 35 ..................................... CACCATATTTTCAAGGTGGATTTTAATTCGTTATC 35027 37 100.0 36 ..................................... ACAAAATAGGCATTTCCATTAGCCCTAGAAGCTTAC 35100 37 100.0 34 ..................................... GTTTAGCTTCCATCCGCGTGCATTGGCATCTCTT 35171 37 100.0 37 ..................................... GAGGAAAAATCGAGATTTAGAATTTTGAGCGAGTGGA 35245 37 100.0 38 ..................................... AGAAATTAGGATGATGGCTCAATTGATTCGACATACAC 35320 37 100.0 40 ..................................... GCATCACAAAGCAACAATGTTCGCCGACAAATTCCATCAT 35397 37 100.0 41 ..................................... ATAAGTTCCAGTATCAGCCCTTAGCGCGGAAAATCTCCCGA 35475 37 100.0 44 ..................................... TTGAACCTTCCGCTAAACAGCAACAATTACCGCAAGGCAGCGAC 35556 37 100.0 34 ..................................... GAGGGAACGTATTAGGTTGCACAGCTTCGGGTTG 35627 37 100.0 38 ..................................... TTAAATTTAGTTGAATAGGGGGATTTATTCCCCCACAA 35702 37 100.0 34 ..................................... GGAGTAATTCTTAGAAATTTCATCCGCTCATAAA 35773 37 100.0 35 ..................................... AAACTGACCATTCACTAAGCTAAATTGCTTATCCT 35845 37 100.0 39 ..................................... AAGGTGATGCCGTTTGAGTTTGTCCGTCAGGTAATTCTC 35921 37 100.0 40 ..................................... TAACCCAACAGGCGCGTGTAATGTAACAAGTTATGCGATG 35998 37 100.0 33 ..................................... TTCGCAGAAGTTTTAGCCCAACTTTTGGATAAC 36068 37 100.0 33 ..................................... GGGAGTCACGATCCCACCCAACAACTAACTCAC 36138 37 100.0 34 ..................................... AGTTCAACGACGGATTCAGGCAATGTTTATATTA 36209 37 100.0 44 ..................................... TCGCTACGATCCTTGATCCAGAAACGGCGATCATATCGTTCAAC 36290 37 100.0 35 ..................................... ATTCATAATATAACCTCAATCGATACCCTATTATG 36362 37 100.0 41 ..................................... TAGGTATAACCCATCCGCCTTGCATTATTGAGCAAGTCCTA 36440 37 100.0 34 ..................................... AATTATCACTGGTTCATAATCAAAAGCGTTTCTA 36511 37 100.0 35 ..................................... GGTTTTGAGCCACTCGACAAACTTCTCCCAGTCTT 36583 37 100.0 36 ..................................... TTTGGTTCATTCATTTTTCGTGGCAAAGTGTTTATA 36656 37 100.0 33 ..................................... ATCAGGACTCATATTCAATCTCGGGAAACCCCA 36726 37 100.0 37 ..................................... AAGACTTGGTATCATAAGTTAACCGCATTTTTGCAAG 36800 37 100.0 34 ..................................... GAGGGAGTAACTGAGATCGGAATGCGATCGCACA 36871 37 100.0 34 ..................................... TAGTTCCCAACCATCCCAGTTGCGGGTGTAAATA 36942 37 100.0 40 ..................................... TTCAGGAATTTCCTCTATTCTTTTTGACAAAACTTCCATG 37019 37 100.0 38 ..................................... TTTTCAGCCGGGGATTTTGGATCGCTCGTTCGTCTAGC 37094 37 100.0 36 ..................................... GGATTTGAAACGCTCGACCTATGCTATTAGCAGATC 37167 37 100.0 34 ..................................... TACTGGATTGCACCTCCAGATGATAACTCAACTT 37238 37 100.0 34 ..................................... CTAAGGGAATTAATCCCAGTCCCGTTGGGGGAAT 37309 37 100.0 47 ..................................... TGGAGTTACTGTTTACGGAGCTGTTGCAACATCTTCAGACCCCAAGT 37393 37 100.0 35 ..................................... AAGGATTGGGGAAATGATGGGGAAATTGCGATAGA 37465 37 100.0 33 ..................................... AGATTAGAAGGTGAAACGAGTTACACCTATCAG 37535 37 100.0 34 ..................................... CGGGGGATGAACGATGGCGAACTCGCCTTTCAAG 37606 37 100.0 34 ..................................... CTTCGATAAGTTTCTCCGCTAAATTTGGTAACTG 37677 37 100.0 38 ..................................... ACTTTATTAGATTTGTCACTGCCAATAAATATTCTATT 37752 37 100.0 34 ..................................... CAAGAAGTTCAAACAGAAAAGACTATTTACGAAG 37823 37 100.0 35 ..................................... TCTGGAATAGACTTGGCTTCGTTGATTCTTGTTAC 37895 37 100.0 41 ..................................... GGAAGATTAACAGCAGATAGCTTTGCTGGGAGCTGCTCAGG 37973 37 100.0 35 ..................................... TCTCTGTATATTCTATCACAGAGGATCTATAAACA 38045 37 100.0 41 ..................................... GATAGAAATATCGCTTTCTTGCCATTCAAAATTATAAATAA 38123 37 100.0 39 ..................................... GTGATTATGAGAAAGGGTTGAATATAACGTATTGTGATT 38199 37 100.0 35 ..................................... CATTTGTAAATATTCCACCGTCCTGAATCCCACCG 38271 37 100.0 34 ..................................... TTTAAAAACCTGATATTGATAGTAAGCCAGTTCG 38342 37 100.0 33 ..................................... GTCTTGGGAGGGCTTCGCCGCACAAATTTCCGT 38412 37 100.0 34 ..................................... GGCAAAGCTAAAATCAAAAGTCGCATTGTGAGAA 38483 37 100.0 34 ..................................... TTGAATCAGCAATATTGCTTCAGATTGCAGCGCT 38554 37 100.0 34 ..................................... AATGATCCAAGCTGTGAGTAAGCAGATCGAGGAT 38625 37 100.0 33 ..................................... AACTAAACAACTATTTTTAACCTTTCTTGAAGG 38695 37 100.0 38 ..................................... CTGATCCTTGCCCACCTCCCGAAGATCCGCCTCTAATT 38770 37 100.0 37 ..................................... CAGTACCTTCTAGACATACTTGCACAATTAGATAATT 38844 37 100.0 34 ..................................... CCAAGAACAGTCTGGTAGCGGGTCTGCCATTCGA 38915 37 100.0 36 ..................................... TGCACTGTAGGGGATTTTACGATCAATAATAAATGC 38988 37 100.0 35 ..................................... AGGTTCAACGCTGGATTAGACCGATTGGTGAGAGA 39060 37 100.0 35 ..................................... ATCCGACTTAAGGATAGATACAGTTGAACTTCTAA 39132 37 100.0 34 ..................................... GTCAAAAAGAGTTTTGATTAACTTTTCTTCTCTT 39203 37 100.0 31 ..................................... TAAAATCATGCACACAGAAACATCGACAAAG 39271 37 100.0 33 ..................................... CTCATCTTTATTACTATGTCTACGCAGGGCATT 39341 37 100.0 34 ..................................... TACTCATGACCAAAGTGCTAATACTATTAATAGT 39412 37 100.0 39 ..................................... AAATCAATTGCATTTATTAAGTCTGTTGGGCGCTCTCGC 39488 37 100.0 33 ..................................... AAAATCTACAGACAATTCTGTGGCTATGGAAGA 39558 37 100.0 34 ..................................... ACATTCAGTTTGGGTAGAATCATAACGATCTAAA 39629 37 100.0 34 ..................................... CACCAATTGCAACTGCTCAAACCCGCTCTGTGTA 39700 37 100.0 41 ..................................... CAAATTTTGAAGGCAGCGAATGTTTAAGGATGTGGCGCAAT 39778 37 100.0 40 ..................................... ACTTCTGATTCCTAGCAAACCTTTACCTTTATTGATACTC 39855 37 100.0 37 ..................................... TCATTCCAGATTGCCTAGCCCATTCTGCTTGGGTCTT 39929 37 100.0 33 ..................................... AGTATAACTGTAATACCAAAGGTAGTAAACCGA 39999 37 100.0 37 ..................................... GCCACCTTCCGAGCGCTCTTTCGTGAATAGCTGACCA 40073 37 100.0 33 ..................................... TTCGATAGCCGTTATTTCTAACACCTAGCAAGC 40143 37 100.0 34 ..................................... TTAACTTCTCTCTCGGAACAGTAAGCCTTCGATG 40214 37 100.0 37 ..................................... AACAACTCAGTCCTGAGCATGACATTAAACTACTCAA 40288 37 100.0 34 ..................................... TTAACGAATACAAACCAAGCAAACAGCCCCTAGC 40359 37 100.0 36 ..................................... GAAAACAGCTAATTTCTTCAGCCAACTGATTGTATT 40432 37 100.0 34 ..................................... CCGCGCCAACGATTTCCTTTTTCATCTGTATAGT 40503 37 100.0 34 ..................................... GAAGACCCGATAAATCTTCCACTCCGAAAACCAG 40574 37 100.0 34 ..................................... AAGTTGAAAAGATAGTTGATTTTTGTTTTACCAG 40645 37 100.0 34 ..................................... AAGGTTTTGAGGATAGCCGTCTATCCTCCTTCAC 40716 37 100.0 41 ..................................... AGAAGTCGCAAAACTGTCACAGATTTTTGATCGGAAAGCTG 40794 37 100.0 35 ..................................... TTATTAGTGAGAATTTCATCTCACCAGTACCGATG 40866 37 100.0 34 ..................................... AAAACAGACTTAACTGACTCTAAACCTTTAACTG 40937 37 100.0 36 ..................................... AGGAAGCAGAACCTTATCATAGAGCAGGTCAGAAAG 41010 37 100.0 33 ..................................... TCTCAGTTCGATATCGTCGATGTTGATGATCAC 41080 37 100.0 35 ..................................... TAAAATGAGACTGGGGCGAGGGACAATTCTCGAAG 41152 37 100.0 35 ..................................... ATACTATCACAAGCCTCGGAGCAAGGATAGCCATA 41224 37 100.0 40 ..................................... ATTGGCGCAGGCAACCCAGGGGAAGTCGCCAAAATCCAGA 41301 37 100.0 33 ..................................... CCAAACTTAATCCAACTATAAATAGATTCAAGC 41371 37 100.0 41 ..................................... ACAGGGAACGGAAAACCTGGGAAATCGAGACCATAGCCATA 41449 37 100.0 35 ..................................... AAAATAAATTTACACCTTAATTATTCAGTTTTAAG 41521 37 100.0 40 ..................................... GCAATACCGTAACACCCCCTACAAAGGCAGAAATAACCTT 41598 37 100.0 41 ..................................... AACCTAACATTCAAGAATTCCCCCCTCTTGGACACTGCCGA 41676 37 100.0 33 ..................................... TTCCTCCACTAACTCTGATATCAAAATCAAGCT 41746 37 100.0 35 ..................................... TTTCATAGCTATTAAGTAGCGCTGGCTGTAGGCTT 41818 37 100.0 41 ..................................... CTACAGCTATTCGTTGATCTTCGACAGATAAACTACACGAA 41896 37 100.0 35 ..................................... CGATGGGATTCAGGACGTTGGAATATTTATAAATG 41968 37 100.0 39 ..................................... TCGAATCATAATACTGATGCCGAGTACACCTTCTCAATA 42044 37 100.0 37 ..................................... GGGGCTATTGGTGTAGGAATGGCAGCATTGTTAAAAT 42118 37 100.0 34 ..................................... CAAGAACTCCTCGACCAATGCGGGGAGTACGTGG 42189 37 100.0 34 ..................................... ATCAAAATTTTAATCAGCGATCAACAAACTGATT 42260 37 100.0 34 ..................................... CTCGATCTAATCTCAGACCGCACGAAGAAATTTA 42331 37 100.0 35 ..................................... ACTTGCCCTTTCATCCTCGTCGTGAATCCGCTTAG 42403 37 100.0 31 ..................................... CTTTGATTTGCGCAGATAGAGATTTATTTAG 42471 37 100.0 34 ..................................... AACTTTTACCCGATTGGGTATCGCCTTTACTCAA 42542 37 100.0 34 ..................................... GTGCGGTTGCTTCGGCATCAAATTTGGTATGCAG 42613 37 100.0 41 ..................................... CAAAAGACGAGGTAGATTTCGAAACGGCGACGGCAATTTTT 42691 37 100.0 35 ..................................... TGGGGATTCCGACAGCAACATTTGGGCAAAGACGG 42763 37 100.0 34 ..................................... ATGGCATCAACCAATTCCTCTCGAATATTTTCAT 42834 37 100.0 36 ..................................... TTAGCTTTGTCCCAATGGGATTATACACCAGCACAG 42907 37 100.0 34 ..................................... TGATTTGAATTTGCCTCGTTGTTTCTGCTGGTGT 42978 37 100.0 33 ..................................... TAAGTCTGATTAGCTAACATAAAAAGGGGGTTT 43048 37 100.0 37 ..................................... GGGGAATTTTTAGGCTAAAGTTTTTCGGAAAAACCAT 43122 37 100.0 34 ..................................... CTTTCGGGCTGTATTCTCCACTGCCATAAAATCT 43193 37 100.0 35 ..................................... CTGACTACGTGCCGACCTGCGTTGAGGACATGGAA 43265 37 100.0 36 ..................................... ATTTTGCAATTCTCTCCAAAGAGCATTCCATTTGTC 43338 37 100.0 34 ..................................... AAATGCTTCCGCCAGGTTGATCCAACTGTGAGAA 43409 37 100.0 33 ..................................... CAAGAACTGGGCATCAACAACCGCAGGATTTAT 43479 37 100.0 38 ..................................... TAAAATCATGCACACAGAACCATCGACAAAGGGCTTAA 43554 37 100.0 34 ..................................... GGGGGAATTTTCCCCCTTCCTTCAACCATGAAAT 43625 37 100.0 34 ..................................... GTCCCAAACCCGCCTTTATACAAGTTCGAGATAA 43696 37 100.0 39 ..................................... AGTTGAAGTTAATTTTCAGCGATTGAACCTGAGAAATCG 43772 37 100.0 33 ..................................... ACAATATACCCTAAAAATGGATGATTCATATAT 43842 37 100.0 34 ..................................... GGGGTTTTGTGTTGTACTGCCCCAACTATTAATT 43913 37 100.0 34 ..................................... AACTTATAAGATATTCTGATCGCCGATACCTGAT 43984 37 100.0 34 ..................................... ACGTCCATCCAACAGGTACTAGAAGGCACCTCAG 44055 37 100.0 36 ..................................... GAAAAAACCTCAGTGGCACAATATCCCGACAGTTGC 44128 37 100.0 36 ..................................... CCCGACCTGTAACTCCAGAGTTACACCGCAACCAAA 44201 37 100.0 34 ..................................... AAGTATTTCCTGTGTGTAAAATTAAGGAGTAAGT 44272 37 100.0 35 ..................................... CAGAAAGATTGGGTGAAAGTAATTCGCGATCAGTT 44344 37 100.0 41 ..................................... AAGATGTGGCGATTACTTACAAACTAGAAACCGGAGGTGAG 44422 37 100.0 44 ..................................... TTGGAAGTTCGCGGGGCTTACAAAGGTGGCGGAACAGGAAATAA 44503 37 100.0 37 ..................................... AAAATAAAGCTATTGAATTCAAAAGAAAGTATTCCCC 44577 37 100.0 34 ..................................... GAGTCGGTGAGTGTGGGGGATGGGTCGATCATCC 44648 37 100.0 34 ..................................... TTGAACTTCCAGCACTTTCTTGGCTAGCTCTATT 44719 37 100.0 38 ..................................... ATTTCTGTATGGAACGACAGCGATAATCTTGTCTCCGT 44794 37 100.0 34 ..................................... TATGAAAAAGAACGTGGGTTAGATGGAAAGCCCA 44865 37 100.0 39 ..................................... CTCTGAGAAAGTAAGCACCCAGTCCGATAGCGAGTGAGA 44941 37 100.0 33 ..................................... GTGGATGGCTGTCGTGCCTCGCATTTGTCCCAG 45011 37 100.0 35 ..................................... TTACAAAAATTTTTGGTAGTGTAGCGGCAGGAATG 45083 37 100.0 36 ..................................... TTTAAGATAGTTAAAATAGCTCAATCTCTGAGCAGA 45156 37 100.0 40 ..................................... ATCTTCTTCGCGCTGGTACTCGGGTGTCATTGAACGCCAG 45233 37 100.0 36 ..................................... AAGCCTTGTTGCCAGACTTGGTAAAGCTCTTTTGGT 45306 37 100.0 34 ..................................... ATCGTAGAGATCAATGTAAACCGCACCGGGCAAC 45377 37 100.0 34 ..................................... TTCATTTTCCCTGACGTTCATTTTTGCCGCAACA 45448 37 100.0 34 ..................................... GGGCAATTGGAGAACAGCTTACAGCGATCGCAAC 45519 37 100.0 36 ..................................... GCGATGATTTTTTCAGAAATAATTTGACCGCCGAAG 45592 37 100.0 35 ..................................... TGATTCCGGTTTGGAATTGCTCAAAACTGTACTCA 45664 37 100.0 34 ..................................... GACAGTTAGATTGAGTTTATTGGCAAGATTTGTT 45735 37 100.0 35 ..................................... TTTCTGAAAGCACTGATAATGCAGTCATCATTTAA 45807 37 100.0 34 ..................................... AACATAAATCTTGATGATGCTAGTGGAAGCGATA 45878 37 100.0 40 ..................................... CTCATCGTAGAAGTGGTAATAATAGGGTTTTGAGTTCATT 45955 37 100.0 35 ..................................... CTTATCTGACAGATTAAAAGATATGGAACACAATC 46027 37 100.0 42 ..................................... GCAGCTTCATTTATCCCTGCGATTGCTTACGAAATTATCCAA 46106 37 100.0 35 ..................................... CGAGTGATTCTATTGCTCGTTCGATCTCATCAATT 46178 37 100.0 35 ..................................... CAGATAGAGACAGCAAGCGACTTTATTCTGATAAC 46250 37 100.0 34 ..................................... AATGCTTTCCACGCCAACCCGAGAAACAAGCAAG 46321 37 100.0 34 ..................................... TTAAGTCTTCCAGGAAAGTAGGAGAAACTTCCCC 46392 37 100.0 37 ..................................... CTAAACCTCCAGCTAGAAGGGGGAAGTAAACTAAATG 46466 37 100.0 37 ..................................... AAGAGAACTTCTCCATCGGATTGAATCATTCAATCGG 46540 37 100.0 36 ..................................... AGCTATCGGCATTCGTCTAGGTATCTTTCTGTTCTC 46613 37 100.0 35 ..................................... GTATCGTACACAGTCCCATCAGAATTTCCTCTTAT 46685 37 100.0 34 ..................................... GGATCGTTTACGGGGGAAAGCCTGTCTGCATTGA 46756 37 100.0 32 ..................................... AACTTGGGACATTCGGAAGATACAGCAATATT 46825 37 100.0 34 ..................................... GGGGAGTTGTAGCAGAGTTTATCATTTATTTATT 46896 37 100.0 39 ..................................... ATTCGATATTCATACAAGCCAGAAATATAATTAAATTCT 46972 37 100.0 35 ..................................... TGCTCTGACAAAACCGGAACGTGATCATAAGCAGT 47044 37 100.0 36 ..................................... ACTTGAACGTGAGATAGAGCAACGCATTGAACTAGA 47117 37 100.0 34 ..................................... ATATTTATTTCGTTTAAACAAATAATGCTGCTTA 47188 37 100.0 39 ..................................... CCTGAAGAAAAGCTAGAACAAATCCAAGATTATAGAAAG 47264 37 100.0 34 ..................................... TACGACCAATAAAATCAGGATTAGAATCTTCAGA 47335 37 100.0 35 ..................................... GAAAAGAACGAGAGTTTTGAACACTTTTGCAGCAG 47407 37 100.0 43 ..................................... TTGGGTTCTGGTTTCTGGGGGATGGGTTCCCAACTGAATTCAA 47487 37 100.0 34 ..................................... GGAAGTTTAGTAAATGCAGAACCAACGACGACAA 47558 37 100.0 35 ..................................... CTTCGTGATATTAAAAAATACTCTTTAGATTCACA 47630 37 100.0 34 ..................................... AAGTTTGGGGAGCGGTTTTATTCTTACAGAAAGT 47701 37 100.0 40 ..................................... GGATAGTATCCCAAGCTTCATCCGGTACGTTATCAGGAAG 47778 37 100.0 40 ..................................... GAGATTTTTCACGGCGAGAAATGCAGAGGCGATGGCATTT 47855 37 100.0 34 ..................................... TTTGAATTCCCTCGGCTTCTTCTCTCGCTCTTTG 47926 37 100.0 34 ..................................... GCCAATATTGACCAGGAATAGGAAGGGGCTGAAT 47997 37 100.0 38 ..................................... TTGGCATTCTCCATGCACAAATAACAAAATCTCCAATT 48072 37 100.0 39 ..................................... TTGATTATCCACTCAGACAAACATTAAAACTTCTACCCA 48148 37 100.0 34 ..................................... TTTGATAATTTTAATTATCATGGCTAATGCAAAA 48219 37 100.0 34 ..................................... ATAAAAGTGCCGACCAACTCCAGAGCGCCAGTAT 48290 37 100.0 34 ..................................... ATAATGAATGTAGAGACAAGGAAAGAGGTAAAAG 48361 37 100.0 36 ..................................... AGCTGAGGAATTAATGTGAAGACTAAACCCAGGATA 48434 37 100.0 40 ..................................... CCTCTATGAGCTTTGCTGCAAGGTTCGGGAGCTGCCCAAT 48511 37 100.0 39 ..................................... TTGTAAATATTATGTAGATAGTTTATTAGATTCATCCAT 48587 37 100.0 37 ..................................... TTTAAAAGTTCAGTCCCATTTGGAACCCTCCTAAATA 48661 37 100.0 33 ..................................... TGCCAAGGAATTCCCCGGCGGGTTCGTATAAAC 48731 37 100.0 33 ..................................... TTACAAATAGCTTTTAAAGCCTGATTATAAACA 48801 37 100.0 41 ..................................... TAACGCGGGTGCTAGACTCGGGTTTCTCTGCTGAACTTTCG 48879 37 100.0 33 ..................................... AGTGAAAAGAGATAGATTAGGGCCGCCAACACC 48949 37 100.0 38 ..................................... AGCGTAAAATTAACGGCGGGTGAGTTTGTCAATCTTGG 49024 37 100.0 32 ..................................... CACCGAGCATTTGGCGAATCCACCGAATAGGG 49093 37 100.0 34 ..................................... TTATGCTTTCTTATTTGGCGATATCAATTCTTGA 49164 37 100.0 36 ..................................... TTTGCTCCCGGTGTGAACTGCTCACCAGGCTTCCTA 49237 37 100.0 34 ..................................... TCAATCCCTTTCAGGGATTCAAAGTTGCACAACT 49308 37 100.0 38 ..................................... TGGGAGTTGACCAATCATTCCTAAGTCTTGAGGACAAG 49383 37 100.0 34 ..................................... TTTGACTCGCAATTCATCTCGCCGCCAAATCGGA 49454 37 100.0 35 ..................................... GAAAGGATTTCTTGCGGCTTTGAATCCATTCAAGG 49526 37 100.0 34 ..................................... ACTACCAGCCAAAATGACTACTAGGTAAATAATT 49597 37 100.0 36 ..................................... GGGACTGTGTTGAGCAGGATGGTTAACCCGGGAAAG 49670 37 100.0 34 ..................................... TTTATATTTATCATTTTAGGAACAGGCTCACCAA 49741 37 100.0 33 ..................................... TCTTTTCAACTTGCGTGACTTCCATTATTTAAT 49811 37 100.0 35 ..................................... GAGAAAAAAGCTGATTTTGCCAGAGAAAAGTCACC 49883 37 100.0 33 ..................................... GGTTTGATTGACGAGAATATAGGCAATTCCCAA 49953 37 100.0 35 ..................................... AAAGACATGGTAGGGGTGATCTCTGAAACTGGACA 50025 37 100.0 41 ..................................... ATCACCCTTGTAGCGAGTCTCTCACCCTATTTTTCGGGATG 50103 37 100.0 33 ..................................... GACTTGTTTGAGAGAGACACCGCAGGACGTAAA 50173 37 100.0 33 ..................................... ATCAATATAAGCCACTGTTTGGCAATGAATAAA 50243 37 100.0 36 ..................................... ACTCCAGTTTACTCTCTAGTAAAAAAACTTAATTTT 50316 37 100.0 34 ..................................... AATTCAGATAGTCCAGTTCCTTCGCGGCGCTCCA 50387 37 100.0 33 ..................................... TCAAGAATATTTGCTCCCAGTTTATTAGATCAT 50457 37 100.0 34 ..................................... AGTTTGCGGCCAGTCAATCACCCGAAGCAATCCG 50528 37 100.0 35 ..................................... TATAGGCTATGAACGCGCGTTTATCAAACTTGGCA 50600 37 100.0 34 ..................................... ATAACCGTTGTAGCGAGATTCTTGCCCTGTTTTT 50671 37 100.0 35 ..................................... TCAAACGAGCGCTACGACATGGGGAAACTATATTG 50743 37 100.0 40 ..................................... AACACCAAAGTAACTAGGAGGAACGGGGAACGCTTCCCCA 50820 37 100.0 34 ..................................... CGACAATAGCAGACGCTGAAACCCGCTCTAGACA 50891 37 100.0 33 ..................................... GCCGTTTTGGTAAAAATCGCAAACAACCGGAAA 50961 37 100.0 35 ..................................... GCAAGGAAACTTGACAGTAGATCGTTGCTGAACCG 51033 37 100.0 33 ..................................... ACTTGTAACTAATCGCCACATCCTGACGAACGA 51103 37 100.0 35 ..................................... TTAGGCTTGCGTTTGCCCGCCGCCGTACCAGAAGG 51175 37 100.0 40 ..................................... TTTTAATTGCAACTCAAAGCGATGCCAATAGATGTCTAAG 51252 37 100.0 35 ..................................... CAACTACATTCTGAGCATCAGTTTGAACTCGAGAA 51324 37 100.0 34 ..................................... GTGACTTCCTGTGGCGTAATCAGGAGTAAAATTA 51395 37 100.0 34 ..................................... CCCTGAAATCCTCCCCGGTGGAACAGTTGTCGAA 51466 37 100.0 32 ..................................... GCTAAAAAGCCAGGCACTCCCTATAACGACAC 51535 37 100.0 34 ..................................... CAGATAATTATCGGCGATCCTACTGAAAGATCTA 51606 37 100.0 34 ..................................... TTCCCATCGAAAGTTTGATGGATCATAATCAAAT 51677 37 100.0 34 ..................................... TTTTACAACAATATCCGTAGTAGTGGAGGTTGTG 51748 37 100.0 34 ..................................... TACTATAGTCGTGTGTAAAACGTGGAAATACGCA 51819 37 100.0 37 ..................................... AATAACATTATACATGATTTTCAACTAAAAAGGTATC 51893 37 100.0 35 ..................................... CGGACTCAGAAGGATTATTATGTTGGCGAATGTGG 51965 37 100.0 37 ..................................... ACGCCAAAATTACCGGGATTATATTTTTTAGCCGATT 52039 37 100.0 34 ..................................... GGAACGCCTATCAATTCACCGCTTGATGCAATTT 52110 37 100.0 35 ..................................... GAAATTCCAGACTCTCTGCACGCCACCCACAAACC 52182 37 100.0 35 ..................................... TAAGTAATTCCAGAGATTTCCCGTATTGAATAAAA 52254 37 100.0 33 ..................................... AAAATCACGATAAAACGCCTTTGACAGAATTGG 52324 37 100.0 35 ..................................... TAAACGTTTGGCAAGTGAAGGTAAAGGCTGGGTTG 52396 37 100.0 34 ..................................... CAGCAAGCTCTAACAGGTGGGCGCTATAGAAAGA 52467 37 100.0 35 ..................................... GAGAATATGCCATCATATCGGAAGGAGTCCCAACA 52539 37 100.0 41 ..................................... CAAAGCCAAAGCGGCGCAAGCCTAACCCACCTAGCTCAAAG 52617 37 100.0 36 ..................................... GAAGTAACCCAGTATGTATACGCTAAATACATCAAA 52690 37 100.0 37 ..................................... TCCTTACTCTTTCTTGGTCGTTGGGGAAGAAATACGG 52764 37 100.0 36 ..................................... GGAGAGCAAGTTGAATCACTCCAACCAACGAAAAAG 52837 37 100.0 33 ..................................... GCAGCTTCCATTAGCTTCGCTAAGATAATATCT 52907 37 100.0 36 ..................................... CTACCGGGAGTTAAGGGAGACAAGGGCGATACCGGT 52980 37 100.0 39 ..................................... TAAACCTAGTTTCTTCTCTAGTTTTGAACAGCAACTCAT 53056 37 100.0 34 ..................................... AAAGCAACTGGGAGGGTTAACGATACAGAAGCGA 53127 37 100.0 34 ..................................... TTTGCTCTAGCGATCGCGGACTTTCCAATCTCAG 53198 37 100.0 34 ..................................... AGTAGCAACCTCGTGGGAGTAGACCGCTTGGATG 53269 37 100.0 33 ..................................... TCGTACTATTTCTTGTAAGGGAAGCGATCGCAA 53339 37 100.0 34 ..................................... AGGGAAAATAGGAAGGCTAAAACCCTGATTCTCT 53410 37 100.0 34 ..................................... TAAATATGCAAGTAAAGCAGTTGCATTTTCTAAG 53481 37 100.0 35 ..................................... GAGGGAGAGTGAGGGGAAACTGTTGCAAGCAGTCC 53553 37 100.0 37 ..................................... CCGGTAGTTCTGCCAGAGCAGAGAATCACTTCAGAAA 53627 37 100.0 34 ..................................... TAAATTGAACGCTAAATAGAGAAAAACAGGAACT 53698 37 100.0 35 ..................................... TCGCCAATTAGCACATCCTACTTGAAAAGGAAATT 53770 37 100.0 35 ..................................... AACTTCCTTCTGAGTTTGTTAATAATCCTGTTGTT 53842 37 100.0 34 ..................................... TCCATCGATAACCATTAAACTCATGCGCTTCCAT 53913 37 100.0 36 ..................................... TTGAGTATACCACTTTTAGAACCATTACACAAAATT 53986 37 100.0 38 ..................................... GTACACCTTGCATTAGGGTATCGGGAGTATTATTCTGA 54061 37 100.0 34 ..................................... TAAGGTTCCCTTCTACATCAAAACCAATATTTAA 54132 37 100.0 38 ..................................... AATATCGGCATAAGGTGAGAGATCTTCCTCAGCTTCTT 54207 37 100.0 38 ..................................... AGGGGAACTCGATAAGGTGCGATCGCAACTGTATCAGA 54282 37 100.0 34 ..................................... AGATTGTCTAGCCAGTTAGTTTCCTTACCTATAC 54353 37 100.0 35 ..................................... TAATTATTGAACGAACTAAAGGAACTAACGAAGTG 54425 37 100.0 39 ..................................... TGAGTTCCCCTGGCGATCGCTAAATTGTAAGATCACATC 54501 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 309 37 100.0 36 GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Left flank : CAAACGCCGCACCAAAATACACAATATTCTCAAATCCTACGGTCAATGGGTACAATATAGTGTGTTTGAATGTGACCTGACTGCAACTCAATATGCTAAATTGCGTCGCCGACTTGCTAAACTGATAAATAACCAAGCCGATAGCATCCGCTTCTATTTTCTCTGCGCCTGCTGTCACGGTAAGATAGAACGCATTGGCGGTGAAATGCCCTGCGACTACTCGATTTTCTTTGTCTAACCTTGGACTTCTGCGCGGTAGGGTAGGTATCATAGCAGAGCATCTCCCAAAAACAGGCTGAATACCTCTATCAGCAATGCTTCTGAACATCTGATCGGCTTACTTCTTCCGCGCAACTTCTGAAAAGCTTACTGGATAAGGGTTTTAGCCAAAAATAGGATTGAGCAACTTGACATCTCTTTCAGTTTCTATGGTATACTTACTCTCATCCGCGCAACTGAACCTCGAAAACCAAATAATTCAAGCACTTTGGGCTACTGCG # Right flank : ACAGACGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACAAGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //