Array 1 1018856-1020530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045038.1 Salmonella enterica subsp. enterica serovar Muenster strain PJM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1018856 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 1018917 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1018978 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1019039 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1019100 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1019161 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1019222 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1019283 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1019344 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1019405 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1019466 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1019527 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1019588 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1019649 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 1019710 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 1019771 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 1019832 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 1019893 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 1019954 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 1020015 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 1020076 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 1020137 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 1020198 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 1020259 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 1020320 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 1020381 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 1020442 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 1020503 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCACCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1038403-1042094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045038.1 Salmonella enterica subsp. enterica serovar Muenster strain PJM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1038403 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 1038464 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 1038525 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 1038586 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 1038647 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 1038708 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 1038769 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 1038830 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 1038891 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 1038952 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 1039014 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 1039075 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 1039136 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 1039197 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 1039258 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 1039319 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 1039380 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 1039441 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 1039502 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 1039563 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 1039624 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 1039685 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 1039747 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 1039808 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 1039869 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 1039930 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 1039991 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 1040052 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 1040113 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 1040174 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 1040235 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 1040296 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 1040357 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 1040419 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 1040480 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 1040541 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 1040602 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 1040663 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 1040724 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 1040785 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 1040846 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 1040907 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 1040968 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 1041029 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 1041090 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 1041151 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 1041212 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 1041274 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 1041335 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 1041396 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 1041457 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 1041518 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 1041579 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 1041640 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 1041701 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 1041762 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 1041823 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 1041884 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 1041945 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 1042006 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1042067 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 61 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //