Array 1 322009-318377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWNG010000001.1 Ralstonia solanacearum strain NCPPB 325 NCPPB325-PB17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 322008 29 100.0 32 ............................. CCACTTGACACGCTGAGTGCGATGCCTGCGAG 321947 29 100.0 32 ............................. GTTGAAATCGCGCGCGCCTTCGGTCGGCTCAC 321886 29 100.0 32 ............................. CGCTGTAGCAGACGCAAACCCTCATCACCGAG 321825 29 100.0 32 ............................. GCTTGGCATGGCGCGTGACCGCGTGTTTGAGC 321764 29 100.0 32 ............................. GCAAAGAAATGACCAAGGAGCAGCGTCGGGCA 321703 29 100.0 32 ............................. ATTTTGGAGCGAAAGGTGATGGCATTACCGAT 321642 29 100.0 32 ............................. ATCCGTCCCACCGTCTGGCTGATCAATGGCAT 321581 29 100.0 32 ............................. GGGACTGACATGTGCATGACGATCGAACAGGC 321520 29 100.0 32 ............................. CTGACGCGAATAGAGCCAGCCGTCAAGGCTAC 321459 29 100.0 32 ............................. TGGTGTCCGAAAATATACAGATGAGAAAATAG 321398 29 100.0 32 ............................. CGAACCGCGTCATCCAAACAGGACGTTGCGAC 321337 29 100.0 32 ............................. AAATGCAATGGCGATGATAAAACCGGTAAACA 321276 29 100.0 32 ............................. ATAGTTCTGGTACACCGTCACAGTGGCCGACG 321215 29 100.0 32 ............................. AAATCCGTAGACGTAACGTGGGTCTTCGTGCC 321154 29 100.0 32 ............................. TTTTTCAATCGGCTGTTTTGTACCTGCCGGCC 321093 29 100.0 32 ............................. CGCAGCTTGGCAATCGGCCCCGGCTTGCGAAG 321032 29 100.0 32 ............................. ACGATGGAGCGTCCGGCGGCGGCGATGGCGAA 320971 29 100.0 32 ............................. GCGTCAATCGGCGTGCCGTTATCGGTCGGTCC 320910 29 100.0 32 ............................. CGACGGCGAACTCACGGGTGTTGTCGTCGGTG 320849 29 100.0 32 ............................. GTCGTTCAAAACGCATTCCTGCCATAACGCTC 320788 29 100.0 32 ............................. CCGTCTGTAGCAGGTTGCATGTGCGATTCCGG 320727 29 96.6 32 ............................T GCTCCTTTTGAATGCGCAGCAGACGGTCAAAA 320666 29 100.0 33 ............................. CCGCCATTCATCCATCCCGGTCGGCGCAATTGC 320604 29 100.0 32 ............................. ACCCTTAGTGCCTCCTCCATATTAACAGCCAC 320543 29 100.0 32 ............................. TCACAATCAACCCGAATCCGTCTCCGGCATCG 320482 29 100.0 32 ............................. GCAAGAAACCATCGCAGCAAACAGCCGAATCC 320421 29 100.0 32 ............................. AAATCAAATACGATGTTGCAGAACTTAAAGGT 320360 29 100.0 32 ............................. GGATTTTGGATCCGCGTCCAGGCGACCATCAC 320299 29 100.0 32 ............................. AGGTTGCTCGGCCACAATGATGATGTGAAATC 320238 29 100.0 32 ............................. TCGCTGCGTGGGCCAAACTCTGCATGATTGCC 320177 29 100.0 32 ............................. ACGAGAGGCATGTCAAATTCCCAGCACGTTCA 320116 29 100.0 32 ............................. TATTTTTCCCGATACGGTTGTCAACGTTATGC 320055 29 100.0 32 ............................. ACCGCCACTCGGTGCAGTTGTCGATTGAATTT 319994 29 100.0 32 ............................. CGCCCAATGGCTGGCTGGTCCGGTTGGTTACG 319933 29 100.0 32 ............................. CGGAGTCGAATAACCAATGAGTGCCCCTATCC 319872 29 100.0 32 ............................. AAAGCGTTGATCCAAGCCCTGGGGCAGGAGGT 319811 29 100.0 32 ............................. AGCGGCAATTCTTGGCTAAAAATCAATTACAT 319750 29 100.0 33 ............................. TCGCCTTTGATCAGGGTAAAGAGTTGCGTATGC 319688 29 100.0 33 ............................. GCCACTCATACCACTGCCACCGGTGACCGGTGA 319626 29 100.0 32 ............................. CGGCAGGCAACGACGTCGCCAGCGCAGTCGGG 319565 29 100.0 32 ............................. GATGATGCGCCGCCATCGCACCCGCTCGACAG 319504 29 100.0 32 ............................. TGGAACGCCATTCCAATACATTCTGTTTGATG 319443 29 100.0 32 ............................. TTTGTCTTGACTATCGACGAGGCATAACTGGA 319382 29 100.0 32 ............................. CCTTCGCAGCCCCGGCCGGGGACTCATCGAAC 319321 29 100.0 32 ............................. CCGGTGTCGGATGCGTTTCTCGTGTTGATTAT 319260 29 100.0 32 ............................. TATCGGCAGGCCCGACGATTCTTACCAAAATG 319199 29 100.0 32 ............................. CGATGGGCAGCGCCTCTATGTAGCGTGCCAAT 319138 29 100.0 32 ............................. TCAGCAACCCAGGAATCGAGGTCCGTGCCACT 319077 29 100.0 32 ............................. TCCTTGTCCAGATAGAACAGGTCGGAGTAGGA 319016 29 100.0 32 ............................. CTTCCACGGCCTCATCCAGCGGCACATCCGTA 318955 29 100.0 32 ............................. TCGTCCGGATTTTGAGCGAACTTTCCATACGC 318894 29 100.0 32 ............................. CACTACGCCGCGTTTGAGCAGGCGGGCCTGGA 318833 29 100.0 32 ............................. CTGCGTGCTCAATTGCGTGCCTTGTTGGGTTG 318772 29 100.0 32 ............................. GCTGCGCTGGCCGAGAAGGGCGTGGAAATCCC 318711 29 96.6 32 ............................A ACTGGCAAGTGGGCGCAACCGTGAAGGTTGGC 318650 29 100.0 32 ............................. GGGAAAAACAATGCTTGATATTCTTCTGCGTA 318589 29 100.0 32 ............................. ACTGCCGAGACGAACGAGACGGTGGAATTCGA 318528 29 100.0 32 ............................. AAGCGGTATTCGGTCGAAGGCCCGGTGGAATT 318467 29 86.2 32 ............TGC..A........... GCCACCAAGACGGCGAGTGAGGATATGCGAAT 318406 29 86.2 0 ...........AT...........TG... | G [318385] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.4 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCTGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTCCGCGCCGGCGTATACATCGGCGATGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : CCAGTGGCCAGGCAGCCGATGTCACGACCCGGATGCCGCTACACGCTAGTGCCGGCTTGACCGCGCCTTTTAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCTCCGGGCCGCTGGCTGCGACGCGACATCGCCGCTGGGCTGGATCAGGCCGCCAGCGCGGCACGCGCAGCGGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGTGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334694-331431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWNG010000001.1 Ralstonia solanacearum strain NCPPB 325 NCPPB325-PB17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 334693 29 100.0 32 ............................. TGCTCGAGGAGTACGCGCCGGCAGCGCAGGGG 334632 29 100.0 32 ............................. CCTTCGCCGTCCCATACGTCGATCGCGAGCGT 334571 29 96.6 32 .........A................... GCCTCGACCGACTCCGTTGATGTAGTAAGGGT 334510 29 100.0 32 ............................. CCGCTCCGTTTCGGTACTGGCCCTGTGCCAGA 334449 29 100.0 32 ............................. GCCGCGCCATGTAGTCGCGTCGTGACAGGTGC 334388 29 100.0 32 ............................. ACGATGTCGCAGAACTTAAAGGTGAAAACGAA 334327 29 100.0 32 ............................. ATGCCGTTTGCGATCTCGGACGCACCCCAGCC 334266 29 100.0 32 ............................. CCTTGCCAGCCGCGCGCCAAGCATTTCGCAAT 334205 29 100.0 32 ............................. CTGCGGCGGCTGGTGATGAAATGCTCAAACTG 334144 29 100.0 32 ............................. GGGAATTCTTCACAACAATTCATGAGTTTAAT 334083 29 100.0 32 ............................. CGGATTTTGACCGTCTGCTGCGCATTCAAAAG 334022 29 100.0 32 ............................. TAACTGTAGGCCCGACGATCCTCACCAAAATG 333961 29 100.0 32 ............................. CCTGTTTCGGATGCGTTTCTTGTGCTGATTAT 333900 29 100.0 32 ............................. GCACCGATCCGGTCGTCCGATCCGGAGGCGAT 333839 29 100.0 32 ............................. TCGCGGCGTGGGCCAAACTCTGCATGATTGCC 333778 29 96.6 154 ............................A TCAAGCCGCAGCAGAATGACGCGCTGTCCGCCGTGTTCCCCGCGTGGGCGGGGATGAACCGCGATTGGACAATGGAGGAATTGATTTCACGGTGTGTTCCCCGCGTGGGCGGGGATGAACCCGCGGTCCCACCGATCGTCAGTTTATCTCCGAA 333595 29 100.0 32 ............................. CTCGGGCTGGTCAAACGCTGCCTGATCCTGTG 333534 29 100.0 32 ............................. AAATGCAATGGCAACAATAAAACCGGTAAACA 333473 29 100.0 32 ............................. GGTTTCCACCGCTTGTTTTTACAGCGCAAGCA 333412 29 100.0 32 ............................. GAGCAGGTCGATATGGACGGCGAAACAATCAT 333351 29 100.0 33 ............................. CGCTCCCGGGCAACATTCATGGATTCGTGCTCC 333289 29 100.0 32 ............................. CCGCCGCTGAAACCGTGACAGAAGAAATCAAA 333228 29 100.0 32 ............................. ATCATCTGGAACCCACGTCACCCAAGCGGTAT 333167 29 100.0 32 ............................. TCATGCATAACCTCTCGGTTACGAATGCGAGC 333106 29 100.0 32 ............................. TCTTCGTCCTTCACTTCCGGCGCGACGAAATC 333045 29 100.0 32 ............................. GCGTGGCAGTCAGAGCCCTGGGCAAGCCCACC 332984 29 100.0 32 ............................. GGCGACAATTACATCGCCGCTTTCGTACATGG 332923 29 96.6 32 ............................C TCGCGGTAGACGCAGATGGCGTCGCCGCGGAC 332862 29 100.0 32 ............................. ACATGGCGTGCATTTTCGAATACGCATGGGCA 332801 29 100.0 32 ............................. GGTATCTATCAGATCCTTCTTATGACAATCGC 332740 29 100.0 32 ............................. CAGCAGGGCGGTCGAGTCCTTCCCGCCCGAGA 332679 29 100.0 32 ............................. CATCCAACCACGAAACAGGCGCGCGTGATCCG 332618 29 100.0 32 ............................. TTTCGGCAGGCCCGACGATCCTCACCAAGATG 332557 29 100.0 32 ............................. GCCGCCTGCAGGCGCGCGTAATCGCGGACGGG 332496 29 100.0 32 ............................. CGCTACAAAGCCGTGCAACCAGTGCCACGCTG 332435 29 100.0 32 ............................. TTGCCGCCATCCGCCACCACGCGCCAGCGCCC 332374 29 100.0 32 ............................. GTGGACGGCTGCGAAGTGGACACCAAGCGCGC 332313 29 100.0 32 ............................. GCTTTGCGCGCAGCATCGCTAAATTCGGTTAC 332252 29 96.6 32 ............................C TGATCGCCGCCGCGCCTGAGCTGCTGGACGCC 332191 29 100.0 32 ............................. CAGGTACAGAAGCTCTGGCGCCGTTGCGATCA 332130 29 100.0 32 ............................. CCCACCAATCACGATTACCAGCCCTGCTTTTT 332069 29 100.0 32 ............................. ACTCACTAGGCAACCACGGCGTTTCCATGACC 332008 29 100.0 32 ............................. ACAATCTACATCCCGAACGCTGCAACAAACGC 331947 29 100.0 32 ............................. ACAGCTTCAGCAATTCTCTGGCCGACGCCATC 331886 29 100.0 32 ............................. AACTCGGCCGCCTGCTCTGCGTCCGACGGCGC 331825 29 100.0 32 ............................. ACCGGGGAATTTTTGCGGCTGCTGCGCCAGCG 331764 29 96.6 32 ............................C GAGCGCATCACCATGCAGGTGCGCGTGGCGAT 331703 29 100.0 32 ............................. CTTCACCAGCATGTCGACGTGGGCTTTCGGGA 331642 29 100.0 32 ............................. CCGTGAAGAGATTTTGGCGTCATTTGACGCCA 331581 29 100.0 32 ............................. GCCAATACCGAAACGGAGCGGCCTAATGTCCA 331520 29 100.0 32 ............................. AAAGTCCAGCAATTGTTCAGTGCAATTGTCGC 331459 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 52 29 99.7 34 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGTATTCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAAACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : CTGCATCAACAGCTCACCGCTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCCACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTAGCAGTCAGCTTTATCACCTTCTTGTCTTTCATGCCTTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //