Array 1 25506-26632 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOT01000017.1 Escherichia coli strain E24 Scaffold16_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25506 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 25567 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 25628 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 25689 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 25750 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 25811 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 25872 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 25933 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 25994 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 26055 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 26116 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26177 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26238 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 26299 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 26360 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 26421 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 26482 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 26543 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 26604 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81315-82197 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVOT01000024.1 Escherichia coli strain E24 Scaffold23_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81315 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 81376 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 81437 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 81498 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 81559 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 81620 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 81681 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 81742 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 81803 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 81864 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 81925 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 81986 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 82047 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 82108 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 82169 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //