Array 1 1896-221 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTM02000004.1 Salmonella enterica subsp. enterica serovar Muenster strain HIY0287 NODE_4_length_431528_cov_41.802527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1895 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 1834 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 1773 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 1712 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 1651 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 1590 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 1529 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 1468 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 1407 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 1346 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 1285 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 1224 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 1163 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 1102 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 1041 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 980 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 919 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 858 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 797 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 736 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 675 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 614 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 553 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 492 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 431 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 370 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 309 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 248 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 271943-268129 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTM02000006.1 Salmonella enterica subsp. enterica serovar Muenster strain HIY0287 NODE_6_length_288536_cov_40.075622, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 271942 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 271881 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 271820 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 271759 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 271698 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 271637 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 271576 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 271515 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 271454 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 271393 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 271332 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 271271 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 271209 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 271148 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 271087 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 271026 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 270965 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 270904 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 270843 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 270782 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 270721 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 270660 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 270599 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 270538 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 270476 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 270415 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 270354 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 270293 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 270232 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 270171 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 270110 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 270049 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 269988 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 269927 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 269866 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 269804 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 269743 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 269682 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 269621 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 269560 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 269499 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 269438 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 269377 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 269316 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 269255 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 269194 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 269133 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 269072 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 269011 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 268949 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 268888 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 268827 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 268766 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 268705 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 268644 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 268583 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 268522 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 268461 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 268400 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 268339 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 268278 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 268217 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 268156 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //