Array 1 44854-46469 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJFJ01000034.1 Salmonella enterica subsp. enterica strain CFSAN008933 SRR1566350_NODE_34_ID_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44854 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 44916 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 44977 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 45038 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 45099 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 45160 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 45221 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 45282 29 96.6 32 ...........A................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 45343 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 45404 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 45465 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 45526 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 45587 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 45648 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 45709 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 45770 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 45831 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 45892 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 45954 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 46015 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 46076 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 46137 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 46198 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 46259 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 46320 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 46381 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 46442 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10067-11964 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJFJ01000015.1 Salmonella enterica subsp. enterica strain CFSAN008933 SRR1566350_NODE_15_ID_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 10067 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 10128 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 10189 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 10250 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 10312 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 10373 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 10434 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 10495 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 10556 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 10617 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 10678 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 10739 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 10800 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 10861 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 10922 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 10983 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 11044 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 11105 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 11166 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 11227 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 11285 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 11346 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 11407 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 11468 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 11529 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 11590 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 11651 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 11712 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 11813 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 11874 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 11935 29 93.1 0 A...........T................ | A [11961] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //