Array 1 36656-36159 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDF01000002.1 Veillonella tobetsuensis strain Y6 Contig_2_len_37440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================== ================== 36655 30 93.3 47 CC............................ TCCATATGAGTATCAAGATATTCAACCCAGCGCTTTCTAATTGTTAA 36578 30 100.0 48 .............................. ACTGTACCAGTTGCTACTGCGATAGTTGTAGAAAATACAGATTGTTAA 36500 30 100.0 50 .............................. TGTACAGCATCTGTAGTGTTACCGAAGTTTACGGAATTCATATTGGTTAA 36420 30 93.3 47 ......C.....................C. CCGTTAACCTCGGCGATTTCATAAGCATAGGAGCTTTGTACTGTTAT 36343 30 100.0 46 .............................. TCATACATGCGTTTAAATAGTTCATCTGTAAATTGTTTATCGTTAA 36267 30 100.0 49 .............................. CATAACGCCTTTAACTCACCGTTGCCTTCAGCAACCTCATATTCGTTAA 36188 30 70.0 0 ..............CT..CA..G.CT..CA | ========== ====== ====== ====== ============================== ================================================== ================== 7 30 93.8 48 ATTAAATAATCCCCTGATGGGGACGGAAAC # Left flank : AGCGATAGCAGTATAGGTTACACTTTCAGTAAGTTTGTCAAATAACAAATTAATATTGGTTATACTTAGTTGCATATGTTTTCGTACAAATGGATTGGTCTCGGAAAAAGAGTGCTTACAATGAGGGCAAATATATCGACGTTGTCTATATTTTCCAATTAATGGTCCTCGTTGTACTTTTCCAAATTTTACCGTACGTATGCGGTAATCTTTAATACGCTCTGTAGTTTCTCCGCATTTTGGGCAAATATGTGGTGTTACCGGTACTTCTATGTCAAAAATAAATGTTCCGTCCAATTCGTAGCTATTTGTAATATATTCTTGTTTTACATTATGTAAAAATTCAGTATAATCAGTAGTAGGCATATAAGCTCACATCCTTTCTTTAGGACTTTGACACTTTTATTGTAAAGCATGTGAGCCTTATATGCTTATTTTTTGCAAAAAAATAATGTTGGAAGTGACACCGTAGTGGTGTCACCCCAACATTTATTATAGAG # Right flank : AAGACTCTATCTTGGAATGGTTAAGATAGAGCCTTTTTATGTTACAATAAGCTTAACAATAGTATTATTTCTTATTTTTATATCCGTGTTTTATTTTTAATTAAAAGGATCTATTATGGAACAATTTCACTCTATGTTTTCTCTATCAGGTCGTATGAATCGTCGATCTTTCTTTATCAATATGTTTATTGTATTTGCCATCGGTTTTGTGGGCGGCTTTATTATGGGCTTCTCTGGTTATTCTATGTTGAGTATTTTAATTGGTGCTCCGTTTATACTTATCGCTATGGTGCGTGAGATAGCCATTGCAGCAAGACGTATTCATGATCTTAATGGTCCTACATTTTTAGCTTTCATTTATATTGTATTAGGGATTCTTGCCGTATGGTCCCGTGAAATTGGTTGGCTTGTATTAGCGTCTAAAATAATTTTATGCTTGATTCCAGGTAATAAAGGTCTAAATTCTTATGGTGATAAACCAGAGAACAGAATCATATTTT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAATAATCCCCTGATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 2460-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDF01000003.1 Veillonella tobetsuensis strain Y6 Contig_3_len_84507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 2459 35 100.0 42 ................................... TTATTTTGTTTGTTAACATCATAAAAATCATTGTTTTTATTC 2382 35 100.0 44 ................................... TTATATCTTATGTCATCCCTGATATTTTAAACATGATTAAAAAT 2303 35 100.0 42 ................................... TTATTGCCCCTTTCAAATAACTATGTCTATCTGTTCCATAGT 2226 35 100.0 44 ................................... CCATACATATTTTGCCAATCTATCATGATTTAGGCTTTTATAGA 2147 35 100.0 42 ................................... TCTAAATCTTGCTGTCTATACATATCTTGTTTTGCCTGTTTT 2070 35 100.0 41 ................................... GAAAATGTCAGTCAAGGTATATGTAGAACATCCATAATTAA 1994 35 100.0 42 ................................... CTTTGTTTTTCTTTTTGTTCGTTTGTTCCGTATTCATCTCTA 1917 35 100.0 42 ................................... TCATTGTCAGATACCTTTATAAAATCGTTCCCCAATTCAATA 1840 35 100.0 43 ................................... TACAGATGTAGCATTTGCAATAGGAATTACAAAATTAGAGCCT 1762 35 100.0 41 ................................... TAGCTGTGATATTGAACAGCTATTCTTTTGGCTGATGTTTT 1686 35 100.0 42 ................................... TGGTGCCACCAGAGCGATCCAATGCCACATAGGAACAAACAG 1609 35 100.0 42 ................................... TGCTTGGTATCAACAACAGCAACAACAAGCTGGTGCTATTCC 1532 35 100.0 43 ................................... GGCGTAATATCGCCTGTTTGTTTGTCAACAGATACGCCGTATG 1454 35 100.0 43 ................................... GATATATCAAGTAGACTTATCATCATTTCAATTTCATCAGAGC 1376 35 100.0 43 ................................... ATTTCATCAATGGCTAGTGCAACATCTGACATTTTGGCGGTTT 1298 35 100.0 43 ................................... ATAATATAGTTTGAATTGGTTAGCTATTTTGTTCCCTCGTGTA 1220 35 100.0 43 ................................... TATTTTTTATGTTCCTTTCGTTTAATTCTTTAGACCGCTTACA 1142 35 100.0 41 ................................... AGATTTTTCATATTATCTCCTAAATACCAATACTAAAATAA 1066 35 100.0 45 ................................... AAGTTTAATACAAATAAACATATATCGTAGTCATCATACAACAAT 986 35 100.0 42 ................................... AAGATATTGACAGTATTTATAAATGTTTGTATGATGAAGAAT 909 35 100.0 43 ................................... TAAATGTTTCATAAGAAACAAAGAAAATAAAACGGCTTGTGGT 831 35 100.0 39 ................................... ATACAGATGCGAATACTAAGCGGGGGTTTTTTTCGCCTA 757 35 100.0 43 ................................... CCCAAGCTTGCTCAGTTTAGGTTACTATTTCACTCTTCTTGTG 679 35 100.0 42 ................................... TGTGGAACATGGAAAATCTCTTCATAATCTTTTTTAACTACT 602 35 100.0 39 ................................... ACTAATACTCAATAATATCTATAATCTTTTGAAATGGTT 528 35 94.3 41 ................T................T. GCACAACGGCAGGAGCTGTAGTCTTCGCTCAAATCCATATT 452 35 91.4 43 ................T................TC TCTGGGCAACCCCTAAATACGAATCGAAATCGTTCAGGGAACT 374 35 94.3 44 .................................TC TTTCAGCCATCGAAACATTTTAAGTGTTGTAAAAACTCTGGTAA 295 35 94.3 0 .................................TC | ========== ====== ====== ====== =================================== ============================================= ================== 29 35 99.1 42 GTTAAATTAAATAATCCCCTGATGGGGACGGAAAT # Left flank : ACGTTATGGCGTGCGTGTTCAAAAATCAGCATTTGAGGCACTACTAAATAGAAAGCAATATGATGCTATGATGCGTCATGCCAGTCGAATTATCAATCCCGTAGAAGATTCTCTACGTGTATATATACTTGACGATATAATTAATATCTATACATGGGGAATTGGAGAACGAAAAGAGCAAGATTGTATTATATTGTAATGAAAATTAATGTATTTATTAGCGCTGTTATTTACTGAGCAATGGTAGAATCATCTGTTTTTATTAGTTATCTATCTTTAATTTGATATCCTTGATGATTCTACTATTGCAATTTCTTTGTTTTTTTATGCTATAATATATCTAGATTATAACCTTGTGAAATAAAATCTCCGCCGTTGTGATAATGGTGCGGTTTATAGGTGTTATTTTAGTGTGCTAAAGTACTGTTTGAGGTCGATTTATGATCTCCGCCGTTAATGGTGATTTATGGCTAGATAACATCGGTTGTTTCAGATACAGG # Right flank : CTATTTTTGATGAAGTTCAGGGTCGTTGCGATATGCTACATGTTAAATTAAATAATGGCTCTCTGTCAAATGTTGGGGTGTTCACCCTACGAGCCTTCTTTGGCACCAATCATATGTATGGTTGGTGCCATTCTTTTTGTACGCCGAATAGGCATGACTAAACCCCCAGTTAAACTGGGGGTCGGTAAAAAATTCTTAGAGAAAAGGAAAGAACCTCCTAGTGGTAAAATGAAGTTGGTCTGGCAACCACAACATTTCAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 13142-12253 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPDF01000003.1 Veillonella tobetsuensis strain Y6 Contig_3_len_84507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 13141 35 97.1 42 ..................................T AACTAGACTACTCTTCACCTATATAATACAAGGTGGTGAATA 13064 35 97.1 39 ...................A............... AGCCAAGACATAAATTGTTTTTGTAACATGATAATATAC 12990 35 100.0 45 ................................... CCCATATTCCATTCTTCTTCAGTTGGTTTAAATACATTTACCATT 12910 35 97.1 42 .................T................. TCTAAGCTCTCTTGTATCCGATTTACTTGAGTTCCTGTACCA 12833 35 97.1 43 ....................A.............. TTACTAAAACATTATTCCATACTTGTAATTCCATGATATACCT 12755 35 100.0 44 ................................... GTATTTACGAGCAACACCTTTAACAATACGATCAATTTCTTCAA 12676 35 100.0 43 ................................... AATTGAGCCATTTGCTCCTCCTTAATTAACTAAAAATAAAGGG 12598 35 97.1 42 ...................A............... CTAAGAGCTTTAAGCTCACCATTGACCTCAACAATCTCGTAT 12521 35 94.3 44 ....................A........T..... CCCAAAGTAGCACCAAAGCCTAACATGATACGTTCATTAGGTCT 12442 35 97.1 45 ....................A.............. ATTTACTTCAATAATTTCTTCATACATTTTAATTTGTTTCATAGT 12362 35 100.0 40 ................................... ATTCTGTGCTTTGCGTTTGGCGTATTCTTAGGGCGTAACG 12287 35 88.6 0 ...........................G...TT.T | ========== ====== ====== ====== =================================== ============================================= ================== 12 35 97.1 43 GTTAAATTAAATAATCCCCTGATGGGGACGGAAAC # Left flank : AACATACGGCCTTGGCCTATGGTGCTACTGCTGAATTAATTTACGAACGAAAAGTGCCAGCTACGATTAATGATGCAGCAGCTAGTGAATTAGCAGAACGGGTTGTGATTGATACCCTTGGTAAAGAGAAGCTATCCAAGATGCGTCAAGTAATGCCGGGCGAAGACTTTGCGTGGTATTTGCAAGAAAAGCCAGGATGCTTCGCCTTTATAGGTATCCAAAATTCAGAGGTAGGCGCTACCTTTGATCACCATAACAATCGATTCACCATGGACGATAGCGTACTATCTGCTGCATCAGCGGTGTATGCAGAATATGCTGTACAGTGGTTGAAGGTACATAAATAAAATTAGTTTATTAGACATTTTAAATGATGCCACATCTTTTAATTAATGCTGTGGCATCTATTTTTATAGTATCTATATTTCTGTTAGATAAATAGTGACATTTCTTTTATATAATTTGTGTTATAATATACATACATATTAACTCACTGAAAT # Right flank : CTATCTCAAAAACTCATATAAGGACAAAAATATAGCCAGTATATTCTTTTTGTGAATGTACTGGCCTTTTTGTATAAATACCAAGGATTTTTTATTGGTTTTAATCACAAATGAATATATAATGAAGTTAATCGAATTTACATTCCTTAATTAGAGTTTGGAGGCGATGTGATGGGTAAATGGGATGCACTGGTAAAGGGTGCATTGCTGCATGATATCGGCAAAGTTGTGTATCGGGCTAATCAGGGAACCGATGCACATTCTAAGCGTGGCGCTGATTTCATTGATCCTTATTTTTTTGATAAGGAATTGAAGCAAAGTATTACGCATTGTTTGAAGTATCATCATGGGAAAGAGCTTAGTGCAGCTCAACTAAAAAATGATGATTATGCATACATTGTGTATGAAGCAGATAATATTGCGGCTGCTGTAGACCGTCGAAATCTTGATGAAGGTGATATATCTCCTACACAGAAATTTGATAAAGAGTTACCACTCCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATTAAATAATCCCCTGATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //