Array 1 3-150 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYF01000022.1 Raineyella antarctica strain LZ-22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 ..G..G....................... TATGGAGCACGCTACGCCCATCGCGCCACCCC 64 29 100.0 29 ............................. ATCAACGCGGGCACGCTCACCACGCCCGA 122 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 31 GTTCTCCCCGCGTGAGCGGGGATGATCCG # Left flank : GGG # Right flank : CGTTGCCATCCCCGACTCGCGGCTCGTCCTCTTCAACCGGTGCGGCCACTGGGCCCAGCTCGAGCACGCCGACGAGTTCAATGAACTCGTGGAGGTGTTCCTCAGCCGCTAGTCGTGACGCGTCCCGGCCACGCCGGTAGCCGGGACGCTTTGTCAACAGTGCCGCCCGGCGCGCCGGTCAACCGCGCAGTCGCTCGGCCAGGAACGCCAGGACCCGGTCCCGGGCGACCCGGGTCGGATGCCCGGGCTCGTCGACCAGGGAGATGGTGAGGACCGAGTGCGCGGACGGCTCGATACCGGCAGCGTTGCCCGGCGAGGAGTCGATCTCGATCCCCTCGAAGGCCCCTCCGAGCGTGGTCCGCAGGGTCGCGAACCGCTCCGGCGGGCAACCCCGGTCGTTGGTGAACCGGAGCCCGAGCACTCGCAGGTTGTCATTCGCCCGTGCAGTGATGGTGGCGAGGTCCTGGGCATCCAGGCCCAGGGCGGCGCGGCCACGCTCC # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGTGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1195-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMYF01000007.1 Raineyella antarctica strain LZ-22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1194 29 100.0 32 ............................. TGCGGGGCGGCGGCTCCTCCGCTGTAGCCGGG 1133 29 100.0 32 ............................. GACTTGAGCGTGTTCCGCGAGATGCCAGTCTC 1072 29 100.0 37 ............................. TGAAGGCGCCGGGGCCGTCTCCACACCAACCCGGGAA 1006 29 100.0 32 ............................. CCATTGCCCTGGGCGGGCTGGCCGTAGCCGGC 945 29 100.0 32 ............................. GCACCCCCTGGACGGTCCACTTCCGCTACTGG 884 29 96.6 32 ............................C GGGATCGTGCGCAAGGCCGACGACGTTGACGA 823 29 96.6 32 ............................C GCCTCCCGCATCTCGTGCCGGACCTCGCGCTC 762 29 100.0 32 ............................. CGACCCCGCCCGGCCACGAGGTAGACCCCGGC 701 29 100.0 32 ............................. CTGTGGGGTTGGCCGGTCGCCTCGAGGATGGG 640 29 96.6 32 ............................C TGCTCCGCGAACTCGGCGGCGGCGCGACCGAC 579 29 96.6 32 ............................C CGCATCTACGACACCGACACCGGCCTCGGATG 518 29 96.6 32 ............................C ATCTGGTCTAGGACTCCCATCAGGCGCTGTGC 457 29 100.0 32 ............................. GCCCGCCTCGAGCAGGCCATCGCCGCCGGCAC 396 29 100.0 32 ............................. TCCAACCGGTACAGCCCGGGCCCGGCGCGGAT 335 29 100.0 32 ............................. CTCGTCCACGTCACCGGCCGAGGCGGTCCGAA 274 29 96.6 33 ............................C GTCAGCCAGACAGCACCGCCGACACTGGTGTGG 212 29 100.0 32 ............................. GCCTGAACCGACCGCCGGCCGTCCCCCACCCA 151 29 96.6 32 ............................C GACGAGGGCATCCTCCGCCTGGCCACCTCCAT 90 29 96.6 32 ............................C CGTCACCGGGGCGAGTGGGACATCGACGTGTG 29 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 98.5 32 GTGCTCCCCGCGTGAGCGGGGATGATCCG # Left flank : GCTCGATGACTCAGGTTCGGAGGATGATCAACTCGAGATCGACGTCATCCACCTCTGGGACGAGGAAGTGGGAACCGTGGCCGGCGGCGTCTCGTATGAGGTTCCCTGGTGACCGTCATAGTGCTCACTGCAGTCCCAGCCGGATTGAGGGGCCATCTGACCCGATGGCTCATGGAAGTTGCCCCAGGAGTATTCGTAGGTCGGGTGAACCCGCGCATCCGGGATGAACTCTGGGGGATCGTCATCGAAATGGTGGGCAACGGACGGGCCCTGATGGTCTTCAATGCTCGCAACGAGCAGGGCATGGAGATTCGGAATCATGGCCACGCGTGGGAACCGGTCGACTTCGAGGGCGTGACCCTGATGCGACGCCCTGCGGCCAACCTGGTCACTGAGGAGAAGCCGAAGGACCGGGTGAGTAGGGCGGCTCGATATCGACGGATCCGCAAGAAGTGATGCAGGAAGTTGGGATGCGTCGGTATCTTCCCTAGTGAGGAAGT # Right flank : C # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //