Array 1 1743829-1743190 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ947475.1 Vibrio sp. MEBiC08052 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1743828 29 100.0 32 ............................. AACGGCGAGGTTCGCACGCGCGGCCAACACGT 1743767 29 100.0 32 ............................. AATCGATTTGAGCACCGTCGCGACGATGATTT 1743706 29 100.0 32 ............................. AATTGCAATCGCATAGGCGTGGTTATACTATG 1743645 29 100.0 32 ............................. ACTGGCGTCCTGAATAAATTCAGAAATATGAA 1743584 29 100.0 32 ............................. CTTGCTTTGTGACCTCGTTTGATAAATCGCCG 1743523 29 100.0 32 ............................. CGCCCGTGATGATTGGGGATAAACCCAATTCA 1743462 29 100.0 32 ............................. TGGTATGAGGACATCTCAGAATTGATCGACTG 1743401 29 100.0 32 ............................. GCGATATCCTCCTTGGGCAAATCAATAATACC 1743340 29 100.0 32 ............................. GGAACAACAACAAGTCCTGTACCGCCTGCCTC 1743279 29 100.0 32 ............................. TAGCTGTGACATGACCATAGTGTCCATGACAC 1743218 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : TTGGGCGAACTCGTGATTATAAGGAATGGTTTCGTACATAGGTTGTCACCTCTGTTTTGCGATGAAATTAAAACCACCACGCAAAGGTTCCTAATCTTTAGGCGGTGAACTAGACAAGGTTAGGAACTACCGCTCGCAATACACGGTGCGCCAAAGCGCCCTTAGCCTAGCTCACCAAAATGCAAGTGTGCCAAAGCCTCATGTAAAAATCTAGTAACATACTGATTCTTACATGTTCTGCGAAAATAACGGGGTTCCTAATCCCGGCACCGGATTTTGCCAGTACAGAGGGTAGGTTATCTGTTTTTGGGAAAATAAAAGTATGAAAAAAGTATGAGATTTTGGGTGTGGGTTCTAAAAATAATCAGCCGATGATTGTCTGAAATTGATAAAATTCAATCCAGTTGCAGCACTTTGGGAAGATGATTTTTGTTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATAATCTATATTTGGA # Right flank : ATCTTGATTATCAATTTCAGCACGGGCGGTTGCAGCAGGTCAGCCTGAACGGGCATTGCCTGACGCAACACCAATATCAGGTGAGCGGTCTGGAAACCCGCCGGACACAGGGTGCGTTGACCAGTCATTTTCAGTATGACGAGCTGGGCCGGTTGAGTGAGCACCGGGTGAGTCAGGCGCAGCAACAGACGTTATTCCGCCGTTATCAGTACAACCGCTCGGGCAATCTGACGCAGGTGGAAGATAACCTGCGCGGTGTGACGCAATATCACTACGACCCGTTAGACCGCCTGACACAGGTGCGCGGTAATATCAGCGAGAGCTTTGCCCATGACCCGGCCGGTAACCTGATACAAGACCGGCTGAGCAATGTGTCCGGCAACCAACTGCTGTTTCAGGGGGACTGTCATTATCAGTATGATGAGTTCGGGAACCTGATACAGGAAGCGCGGGGCACCCATCAGTCCCTGGTCACAACCTATGCATATGACTGTCAGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3022645-3021031 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ947475.1 Vibrio sp. MEBiC08052 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3022644 29 100.0 32 ............................. GGTTCAGAGGGTTTTAGCTAACGCTTCGCGAG 3022583 29 100.0 32 ............................. GTACGCAAACCTTTTTTATCTGTAGCAAAAAC 3022522 29 100.0 32 ............................. GGATTCGCCCCTTTTTAAACGGGTCTGTCTCG 3022461 29 100.0 32 ............................. CGGGAGGCACGCATTCGGTTTGGAATTTATGG 3022400 29 100.0 32 ............................. GGAACGATAGCCGGGGAGGTGATGAGGATGGT 3022339 29 100.0 32 ............................. ATAGTTAAGGCAGTTTTCGCCGTTATTATTCG 3022278 29 100.0 32 ............................. AGTGGCGTTTTCTGGTAGGCCATAAAGAACGC 3022217 29 96.6 32 ............................A TTCAAGCGGTTACACAATGGGATGAAGAATTC 3022156 29 100.0 32 ............................. TGATGGTTGTTGGCCTTGGTAAACATATTCCA 3022095 29 100.0 32 ............................. TGTCGGATTCGGTTTCTGGTACCGCATTAAAG 3022034 29 100.0 32 ............................. GTCGGAGCATAGAACGGTCGGGGGTATATTCT 3021973 29 100.0 32 ............................. TGCTTTGTTACCTTCTTTTTCCGCCTTGTCGC 3021912 29 96.6 32 ............................A TGATCGGAATTACCGTACCAGCGTTTTTGTAT 3021851 29 100.0 32 ............................. GACATTCATTGGATGGACGCCAGCTTTAGAGC 3021790 29 100.0 32 ............................. CAACGCTCGCTCAGATGACTTGGTTCGCAATC 3021729 29 100.0 32 ............................. AGAAACTTGCTCTTGCACTTAGTGACGCGGCA 3021668 29 100.0 32 ............................. AAAATAAAGACTCTGAACGTTTCTCAATACCA 3021607 29 100.0 32 ............................. CAACCCAACAATACATATAATTACGAATAAGC 3021546 29 100.0 32 ............................. GCCGAAATCAGGCGCAATGATTTATATAGATC 3021485 29 100.0 32 ............................. GCATTCGGATTGCATCGCCTTCTATGTCGTAT 3021424 29 100.0 32 ............................. CGCGATTAGAGATTCTATCGAGATTGGTAGAA 3021363 29 100.0 32 ............................. GTGACAAGCCTAAGCCTAAACACCCCCCGAGA 3021302 29 100.0 32 ............................. TCTCCGCAACGGTTCGCGCGGGGCTTAACTAG 3021241 29 100.0 32 ............................. CGCTACAGACAACGCGCCCGCGGCGTCGTTGG 3021180 29 100.0 32 ............................. CAATCGGAGATATTCAAAAATTATATTCGTAA 3021119 29 100.0 32 ............................. CTCCTTACCCGGTTCGTAATTTTTGGAGTTGG 3021058 28 86.2 0 .......................-..TTA | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.2 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TGAGCCTGAATCTTACGGTGATGTCGGACACAGGAGCAAATAATTGTGAGTATGTTGGTCGTTGTCACAGAGGCCGTACCACCCCGTTTACGTGGCCGGTTAGCCGTCTGGTTATTAGAAGTACGCGCTGGGGTGTATGTCGGAGAGGTCTCGCGACGAGTTCGAGAGATGATTTGGGAGCAAGTGACGCAACTGGCGGAAACCGGCAATGTGGTCATGGCGTGGGCCACCAATACTGAATCTGGTTTTGATTTTCAGACGTATGGCGAAAACCGCCGGGAGCCGATTGATTTTGAGGGGTTGAGGCTGGTGAAATTTAAGCCTATCGAGAGTGATATGTAAGTCGCTATAAAGACAAGGACAGGCACTTTGGCAGCTCACCGGACACCAGATTGTTTGATGATTTTCGGTCAGATCGCTAAGCGTCAAAAATAGGTAAAAATGTTGGTAGATTGTTAACATGTAAATTTATTTATATAAATCAGATGTCTACAATTAGA # Right flank : GTCTTTAAGCCGATAAGAAAAAAGGAGGGTTATCCTCCTTTCCTTTGACTATTTGCTTGATTTCGGTTGTGTAAAACCACCGTAAACATCGAGACGGCGGTGACGTAAGTTAGTCACAGAGCCTTCGGTATTTAACTGCTTCAATTTATCTAAATCAACATCGGCAAAAATGATCATCTCTGTGTTCGGGCTCGCTTCCGCAATCGTGGCATCGTGCGGGAAGAAAATATCGGATGGTGAAAATACCGCAGATTGTGCGTATTGAATATCCACATTATCCACACGTGGCAAGTTACCGACGCTGCCACCAATCGCGACATAACATTCATTTTCAATTGCTCTGGCTTGTGAACAGAGACGGACGCGTTGATAGCCATTTTTTGTGTCAGTCCAGAACGGAACAAACATGATTTGCACATCCTTTTCTGCCATCATTCGTCCAAGTTCCGGGAACTCGCTATCGTAACAAATCAAGATACCAACACGTCCCGCATCGGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3108620-3107859 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ947475.1 Vibrio sp. MEBiC08052 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3108619 29 100.0 32 ............................. TACGAAGAATCACCCGACTACGAAATTATCAG 3108558 29 100.0 32 ............................. GGTTTGATATACCCAAAAGACGATGTTATGCG 3108497 29 100.0 32 ............................. CGCGCGAAAGACATCGCAGACTACCTGATCAC 3108436 29 100.0 32 ............................. TTGGCGTCTATTACTACATGCTGCCAACCATC 3108375 29 100.0 32 ............................. CAAAATCCAACTGGATCATCTTTGTGTAACCG 3108314 29 100.0 32 ............................. TTCTTAAAAGAACGTTGATCGAAATGGTCGAT 3108253 29 100.0 32 ............................. GGTAATCAATTCAACGTTCAACGAGCGAGCGC 3108192 29 100.0 32 ............................. ATCATCTAGCCTGTCCTCATACATGCCCGCAC 3108131 29 100.0 32 ............................. GTATCTATCGAGACATTAACAAACTAGTTGAC 3108070 29 100.0 32 ............................. AATGCGTATGAGTTATTAGGTTTCACTACTGA 3108009 29 100.0 32 ............................. ATCAATAATATGGAGTTGGTTATTTTCTGGAT 3107948 29 100.0 32 ............................. CCAACATACCGCTACGGCGGCGTGTCTATGGT 3107887 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGTACATACGGGGATGAACCG # Left flank : TTAGGAGGATTTACATTAGTAGCCATTCATCAGCTATTTAATCCTAAAAAAGATATTAGTGAATATGCAACCGCATATCGCGGTGCTTGGATAAAGATAATGTGGATTACGCTAGCCGCTGTCATCGTTGCTATTCCCTCCCGTTTCTACCTCGGCTATAAAGTCGATCAGGCCGGATATGTTAAGTGTATGAATGAGTCCCGTACCTCTGCTAAAAGTAGCTGGCGGGTGTATGCCAAATCAGAAAGTTTATGTAAAGATTCTTCCGGGATTTATGGGGGGTAGTTAACGCGACTTGGCACAATTTTATCTTCCTAGCCTTTAGCTCCCCAATTTGAACGATGAGAATAGCTGAGCAGGAAGAGGAAAAATTAATTGCGTACTAAACCCACAATAGCTTCGTAACCTGCTTAAATTGATGACCTTTAAAACAGACTTCAAATGTTGGTAGATTGTGAAAGCCGAAATTTGTATTTATAAATCAATTAACTACAATTAGA # Right flank : AATTGCAGGATTGCCTGAGCAGGATGCAAATCAGTCCGACCCTGATTAGGTGCGCTGGTGATTATGTGACTGAAATCGATGAATCCTGAGCGCACCAAACCAGCAGCCTATCGTTTTTACCCTCCCACTCCTAAATTCTTATTGTTATTAGAGATAACTAATCCGTGAATATATTGAACCTTGTTCATAAAGATTAAAGATGCATCCTGAATGTGCAGAGCAAAGCGTATCCATTGACTATGATTTAACATTGTTTCAAACACTAACAACAAACTGACGAATTTATTTTTACAGTAGGATTGGTACATAAGAGGCTTAGATGAAAAAGATTCAATCAACAGTATTTGCTGCGATTGTTTGCAGCCTGATTGGTGTGAATGGCAGCTATGCAGCGCAAAGTTCACAAAATCTGAACAAGATACAAAATCAACAAAATTCAACAGTCGATATTCTGGTCAATGGTAGTTTTCAGGGAGATACCGGCTGGTGGGCATCGGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACATACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGTATACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3114017-3113625 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ947475.1 Vibrio sp. MEBiC08052 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3114016 28 100.0 33 ............................ AAGTGAACCCCGCCCATGTTTTAACTTCACCGT 3113955 28 100.0 32 ............................ AAAACCGGTTCTCCGTTGTCATAGCGGATTTG 3113895 28 100.0 32 ............................ TATTGTAGGTAAACTCTTTTACTTGACAAATC 3113835 28 100.0 33 ............................ AGTAGTAGGAAAAACCGCCGTGCCTTTGATCAT 3113774 28 100.0 33 ............................ TTTTGAGCTTAATGTCGGCTCGCCCTGTTTATT 3113713 28 100.0 33 ............................ ATTCGGCACAGCAAACAGATAGTCCTTTATCGT 3113652 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTTCACTGCCGCGTAGGCAGCTTAGAAA # Left flank : CAGAACCAGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCTTGAATGGTTTTCTTGGTCGGGTGGCTGATTTGAGTGGGGAGAAACACTGAATCAACGAAACTCAATTGATCGATGATCTCAGGGTAAAATTCATGGAAGAATTTTAAGCTTTTCGTGAGCAGGAGCGAATAAAAGCGTCCCTGATTCGGTGCACTGAACTCAACCCCTAGGCCTTTTGGGGTACTTTTTCGGCCATGAAAAAGTACCTGGGGCGCAGTCGGAGATGTTGATGAAATCGAGGAAAGTGATTGCGTCCCAAACCGCAGAGTCACAATTTTATATTCCCAGCCTCCGGCACCCAAATTTGACGCCATCAGACCCTTTATTTTTCACCCTTAAAAAATACGCATAAAATCAATAAGTTAAAAACAAGCATTTTTAACAAGGTAAAAAAGGGATTTTTCGACTAACCTTTTGCTGTGACAGGGTTTTTCGTGATAAGTTTATT # Right flank : CCAAGGGATTTGAACCCTAAACCGAAAAATATGTTCACTGCCGTATACATGGGTAATCAGAACTATTGCTTTGAATTGAATCGCATTTTTCTCAGTAATGTGCGCAAAGTGAGGGTTGGTGGTGTTCTTTGTCAGCCCCTTCTTTTATGCTAACCTCATTATCCACAACCAGTCTCATGCCACGATTATGAAAACAACCCTCGACCATCTTCCCGAATATAAACAGCGTGAACTGGCGATAATCTCAACGGTTTTGCGTGACACGTTAGACGATTATCTGCAAGGCAAAGCGGGCAGTAAAAGTGAATTCCGTATTCTGAAAATCATCCTGTTTGGCAGCCATGCCAAGGGGAATTGGGTCAGTGATCCGGTCAATGGCTATATCAGTGATTATGATATTCTGGTGATCGTCAATAAAGCAGCGTTGGTTGAAGATTATGTGGTCTGGCAGCGTGCCGAAGAGCAGATTGATCGCAAAGTGAAATCGGCACCATTGGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3390476-3389651 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ947475.1 Vibrio sp. MEBiC08052 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3390475 29 100.0 32 ............................. GAAATTCAGGGCGAAGCGGCAAAAATGGATGC 3390414 29 100.0 32 ............................. ACAGAGGAACAAAAGAGGTCTGAAGCTGATGC 3390353 29 100.0 32 ............................. CCAGGATGTTAACAGATAATGTGATGCTGCTT 3390292 29 100.0 32 ............................. GCGAATATTACTACGCTCGGGCGATTAATCAG 3390231 29 100.0 32 ............................. TATTGTTATTGGGGTGGACCCGGATAGCGATC 3390170 29 100.0 32 ............................. GAGAAGACCCCGCCGGCGGAAAAGATACAATG 3390109 29 100.0 32 ............................. CGCTCCATTCCGAGACCAGCCCACCAATCTTT 3390048 29 100.0 32 ............................. GCAAAACCAGTAAATCGCATAACCATCAGCGC 3389987 29 100.0 32 ............................. GCATATGAAATAATCCTTATAATTATTACTGT 3389926 29 100.0 32 ............................. GACACCAAATGAAAAACAAACAATTATTTAAC 3389865 29 100.0 33 ............................. TCAACATATTTTACAGTTTATCTAGCCATTTTA 3389803 29 96.6 34 .....................G....... TCCCCCGCCCCCGGTGGTGTCGCGTGTGTGCTTC 3389740 29 100.0 32 ............................. CACGTTCACAATGGAACTGGTCAACGCGACAA 3389679 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 14 29 99.8 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : GGGCGAACTCGGGATTATAAGGGATGGTTTCGTACATAGTTGATTCCTTGGAGAATGATGAAAATAAACTCACCACAAGAGTTCCTACACTCGGGTGGTGAACTGGAACAAGGTGTAGGAATACCGCTCTCCAAGACACGGTCAGCCAAGGCTGCCTTGCCCAGCTCACCATAATTCAGATGTGCTGAGGCCGCATATAGTAAAAAACCAACTAAAAGTTAGCAACCTATAATACTTGGAGTCTTGTGAGCGGGTTCCTACGCCCGGCACCGGATTTTGCCAGTGCAGAGGGTAGGTTATCTGTTTTTCGGAAAATAAAAGTATGAAAAAAGTATGAGATTTTGGGTGTGAGTTCTAAAAATAATCAGCCGATGATTGTCTGAAATTGATAAAATTCAATCCAGTTGCAGCACTTTGGAAAGATGATTTTTGTTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATAATCTATATTTGGA # Right flank : CCCATAAAAAACGATAATAAACACATCTCTATTAGTGTTCCCCGTACACACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATCCATGACATACAAGTGTTCCCCGTACACACGGGGATGAACCGCAAAAACGCGAGTTGAATGGACAGAGTAACCTGTGTTCCCCGTACACACGGGGATGAACCGCCGGAACTACTCACATTAGAACACAATTCGGGGTGTTCCCCGTACACACGGGGATGAACCGCAATGTAGCATTGTTAAGTAACCATTTGATTAGTGTTCCCCGTACACACGGGGATGAACCGTTTGAACATTTAGAGCTGATTGATATTAACTGGTGTTCCCCGTACACACGGGGATGAACCGCATTCTTCTCTGAGCTGCTCCGAGTAGTACCAGTGTTCCCCGTACACACGGGGATGAACCGCTACCTGCACACACCGGTACTGAGGTCATTATGTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3958182-3958701 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ947475.1 Vibrio sp. MEBiC08052 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 3958182 35 100.0 35 ................................... ATCTAGATCAGACATAGTCCGATCAATCATTTTCT 3958252 35 100.0 35 ................................... GAAGCACGTCCGGATTTGTTGTGTAGAATACTGCC 3958322 35 97.1 33 ............A...................... ACTTACCAAACCGCGTTTCCACGCGAGACTGGT 3958390 35 100.0 35 ................................... AAATCTCCTCCATCCCTAAAAGGGGTACGCTGGTC 3958460 35 100.0 34 ................................... CTTGGGAGGGCCATCAGCAAAATGTTTTTTCTCA 3958529 35 97.1 35 ........................A.......... ATTATAATAACCGAACTCTACATTCTTGTAGATTC 3958599 35 97.1 34 ............A...................... TGCTCGGATGTTACTTTTTGATTATCCGGTTTGC 3958668 33 82.9 0 ............A.......G..T.-.-.....T. | G [3958690] ========== ====== ====== ====== =================================== =================================== ================== 8 35 96.8 35 GTCGCAGACAGCGTTGCCGTTAAGGCAGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATGGATGGATTTAAGGTAAAATGAGTGTAATTTTGCTGTTTGTCACAGAGGTTCGCCGATCCGGGTTGATCAGCCCAGATTTTTCGGGCATTGTAGAAGGTGCT # Right flank : CAATAAAGCCCTGCCGTGGAAGCAGGGCTTTATTTTTATCAAGGCGTCGGGGATTGCTCTGAGGCGGGCTGGTGGTTGGCTTTGCTTGGGACGACATTAACACTGACATCGGCACTCGGTTTGAGAGCTTTCGCAGCCGGTGGTGAAAGTGGCTGCTGCGGGGCCGGACCGGGTTGTTGTTGAGCCTTCCGGGGCGCTTTTTGTGGTGAGAAGAGCAGGGCGATCATCACCACAATGGCGCAAATCAGCACGGTCGCAATGGTTTTAAAACTCTTGTCATAACCGTTTTGAATCTTCTGCATGATCTGATGATGTTTCAACTGGATGCCGGCACTGTACAGCATAAAGCAGAGCAGCGTTGTCAGAATAAAAGGAATATGCCAGTCGAAAGAGATAAAGCTGAGCGGCCGGGCACCAATTTCGGCAAAATTCGTCCCGAACACGCCAGTCAGAAAAATGAGCGAAGTCCCGAACACAACCATCGTTTTCAGGCGCTCTCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGACAGCGTTGCCGTTAAGGCAGTTGAAAC # Alternate repeat : GTCGCAGACAGCATTGCCGTTAAGGCAGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //