Array 1 670-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDM010000020.1 Campylobacter sputorum strain YZU0718 NODE_20_length_9378_cov_112.839050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 669 30 100.0 36 .............................. TAAAATTATTTGATGTTCAGTTACCTAATGAGATTG 603 30 100.0 37 .............................. AAAAATAAAGTAGAAAAGGTGATGGAACAAAGAAATC 536 30 100.0 36 .............................. AAGATAGATGATAGTGTAGTCCTTGCTACAAGGCAG 470 30 100.0 35 .............................. CAAAAAAACAACGCCTTTAATGATGATGAGCTTAC 405 30 100.0 35 .............................. TAGCTACTTTGATAGAAAATGAAGTTTTGGATGGA 340 30 100.0 38 .............................. CTGCTTGCATTGTTCTCTCCTGTGCAGATTTTTGCTAT 272 30 100.0 35 .............................. TAACAAGCAAGAAGAAGCTTGGAAAAAAGTTCATC 207 30 100.0 35 .............................. CAAATAAATTTCCGCCTGTAATGGCTTGTGCTGTG 142 30 100.0 35 .............................. TAAGTTCATTTATACCGCCAAGTCCAAGTGAATTT 77 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 100.0 36 GTTAAAATTTGATCCTATGGATTTTGAAAC # Left flank : TTAGGGGATAATTTGATTTTTAATATGCTAAACAAGGATGAAATCACAGCAAAAGACTTTAAAACCGATGCTGGAAGGATAAGATTTACAAACGAAGCGGTGCAAAAAATAGAGTTAAATATGATAAAAGCCCTTACTTCACAGGTAAAATTTGAAAATCAGCTTCTAACTTACAGACAGATAATTAGGCGTGAGGCAAATCAGATAAAAAAGTGTATTTGTGAGAATTATCCCTATGAAGGGTATGTTGATTAGTTTTATTGTGCGTAAGGGAAATTTTGTATTTTTTGGGGATTAGTTTTTAAAGCTAAATTTGGAATTATAAATTTTGGTTGGTATTTTGGTAGCGTTCAAACTTTTTTTAAAGCTAAATTTAAGTTTATACGAATGCCTATATTTAGCGATTTTGTTTTATAGACATAGCTTTTATAAGCGGCTTTTAAGCTGGATATATCTATAATAATTCGCAATGGTTGCCGATATATGACGATTTTGTTGCT # Right flank : CATAAAAAAGGATGACAATGCTTAAATTTGAAGTTGGGTTAAAATTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTGATCCTATGGATTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 75129-72867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHDM010000009.1 Campylobacter sputorum strain YZU0718 NODE_9_length_75128_cov_119.639525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 75128 30 100.0 36 .............................. ATAAAAAAGGATGACAATGCTTAAATTTGAAGTTGG 75062 30 100.0 36 .............................. ATAAAAAAGGATGACAATGCTTAAATTTGAAGTTGG 74996 30 100.0 35 .............................. ATTTCAGCTTTGATACAGCTTATCGTAATACTTTA 74931 30 100.0 36 .............................. TAAATTTAAGCCATATTGCAGTAGGTGATGGAGAGA 74865 30 100.0 36 .............................. AAGTAATAAAACAAATAAAAGATAATCCAACACATT 74799 30 100.0 34 .............................. TTAGTGTCAATGTCAAAGCCAATTTTATATAAAA 74735 30 100.0 36 .............................. CTGTAGCAACAATAGTAGAAACCATATCAATTCCAG 74669 30 100.0 37 .............................. TTAGAATGTGCTATCAAATGGGTGTAAATAGTGTTAA 74602 30 100.0 36 .............................. TTGGATATACATACGGAGGAAGTGGGGATAATTTCA 74536 30 100.0 35 .............................. CATTTAGCCCTCTGCGAATACAAAGAACACTCTCG 74471 30 96.7 35 ..................A........... TAGTCCTGTTTGTATCAACATTAGGGATTATTAGC 74406 30 100.0 35 .............................. TTACAGGTGAGTATATTCCATTTGACTATACAAAA 74341 30 100.0 36 .............................. CAAAAAAGCTAAAAAGCTAGAACAAAAGCTGTTTGA 74275 30 100.0 36 .............................. TTAGGTAAAAAAACTATCAAATCAGGGAAACCTGCA 74209 30 100.0 35 .............................. GTTTAAAAAGGATTATTTATGGATGAATTATCAAA 74144 30 100.0 35 .............................. ATGAGAGTAATATAAATCTCATAAGGCAAGAATAC 74079 30 100.0 35 .............................. ATGTTAAATCCAACTATACCCATTCAACAACACAA 74014 30 100.0 34 .............................. TCAGAGAATGGGATATGTATTATAATGAGAATAA 73950 30 100.0 36 .............................. CTTAATTGTTTTGCAAATTGTGTTAAATCGTCATCC 73884 30 100.0 35 .............................. GCTTATATGACATCTTCTGCTGAAGATACTGCAGA 73819 30 100.0 37 .............................. CAAATAATGACGAGGCTACGACTACCGATATAAGTGA 73752 30 100.0 34 .............................. CTTAATCAAATGGTTAGAAATTTACGAATTAAAA 73688 30 100.0 35 .............................. CCAGCACCTATGATATTTGCCAAAGCCATTGGAAA 73623 30 100.0 37 .............................. ATTCTAAACTAGATACAAAAGCAGATAGTGAAGTAAG 73556 30 100.0 35 .............................. CAACAACAAGCCAAAATAGGTATCATAAAAATACC 73491 30 100.0 35 .............................. AAACTTCCTTGGCTAAAAAACAAACCAAGGGCGGT 73426 30 100.0 36 .............................. CGTTATAGTTACGGCCGCCGTTTACTCGGGCTTCGA 73360 30 100.0 36 .............................. CAGGAAAAGAAGTATCAAAAAGCTATCTTAGCGAAA 73294 30 100.0 36 .............................. TAAAGATGATATAGATAATAAAAGCGATGAGATAAA 73228 30 100.0 36 .............................. ATCCTATGTATGAGTTTGATAAACGAGGATTAATTT 73162 30 100.0 37 .............................. TAACAACAACTTTTAATATAAATGACCCAAATGCAAA 73095 30 100.0 36 .............................. CAACTATTGAAAAGGGTCGGCGATTTGGTTTTACAA 73029 30 100.0 37 .............................. CTTGAAGAGTTGCAAAAAGCTGAAAATTTAGAAGAAC 72962 30 100.0 36 .............................. AAGCTTCATCACTTAAATAATCGTGAACTACAACGG 72896 29 86.7 0 ..........-.C............T...T | A [72878] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.5 36 GTTAAAATTTGATCCTATGGATTTTGAAAC # Left flank : | # Right flank : CCAGCAATCTTTGCGGTAATAGTATCAGACGACATTCAAAATGGGGATATATAATCAAAAATAGTAAAAATCCCATTTTAAATGCAAATTTAAAACATTTAAACACTTTTTAAGCCAATTAACATCTCTTATCAACCCTACAAATTTACCTATTATTTGACACTCACATTCATAATATCTAACAGGTGTATATAAAGGATTATAAGATACTAGCATAAGCTCATTTTCTTGTTTATAGCACTCTTTTATTACAAGTCCATCTGGTGTATTGATAGCATAAATGCTTCCATCTTTGTATATTATATCAATAGCTATAATGCATAAGTCGCTTTCCATGATATGAGGTTCCATACTATAACCCATACAAGAGATTATATCAACTTGATGTATAGTGCCACAATTACTAATTTTTTGAGTATTTTTTTATCTATTATTACTTCATCAAGCTCATTTTCATCATTATATTCTCCACTATCAAGACTAGCTTTTAAGCTAGACAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATTTGATCCTATGGATTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //