Array 1 132162-127976 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBEF01000005.1 Legionella pneumophila strain NMB001867 502829-08_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 132161 32 100.0 35 ................................ TTGTTTTGAAATGCTTATTACATTATTGGCCATTA 132094 32 100.0 35 ................................ AATCCTTTTGTCTAGGCCTGTATATGGTCTACGCC 132027 32 100.0 36 ................................ AATTATTACTAGGGACTAGTAATAAAATCACTGTAA 131959 32 100.0 34 ................................ GTATCTAGTACTGGTACATATAATAATTATGTGT 131893 32 100.0 34 ................................ AAGCTGAAAAAGATAAACAAGTTAATAGTGCTTT 131827 32 100.0 33 ................................ ATAACATTTTGCGGTGATTGCTTTTCGCAAAGG 131762 32 100.0 34 ................................ TCAAGCCAATACTTCATAGCGTCTACACTTTTTT 131696 32 100.0 36 ................................ TTTTGATAAATAGACTTTGAAGTTATCGGCATCTAC 131628 32 100.0 34 ................................ TCTCATAGCACGAAGCCCAAGGGCGCAATTGTTT 131562 32 100.0 36 ................................ AATCCTAATGACAATGAAGTTTTTATCCCAGATTTG 131494 32 100.0 33 ................................ ATCCACGTCTTTTGAGGTGATGCCGTTAATACG 131429 32 100.0 35 ................................ AGTCAATTTTGTACTTATTGGCGAGAAGGGCGACC 131362 32 100.0 37 ................................ ACGTCTACATTTGCTGCAACGGTTAAAGCGATATGAG 131293 32 100.0 35 ................................ AAATTGTGTCTCGACTACCAAGAGCGGCACGACAT 131226 32 100.0 34 ................................ CTTTATCGGGGCGCAAAAGAATCGTCCAAAGCCT 131160 32 100.0 35 ................................ CTTCCGAGGACGGAAGTTATGTGGGAACACCCCAA 131093 32 100.0 36 ................................ AATATCGTTTACTATGATTAATTTTGTCATAACAAA 131025 32 100.0 35 ................................ AGTTTATGCTTATGATTTAAGCTTAGAATTAAAAA 130958 32 100.0 36 ................................ AGGTGATAATACAGATACATATGAGCGCATAAGTGC 130890 32 100.0 36 ................................ AATGCTTTCATGGTGAACGTTGCTCTTGGCAAAGGT 130822 32 100.0 36 ................................ CCATGTGCCATTGCTATTAATGTAATCAACGATGCT 130754 32 100.0 34 ................................ ATCGCAATGATGTTGGCAGCAGTTAAAGGGACAG 130688 32 100.0 35 ................................ ATGTTCTTGTCAAACCACATTGCTATAGCACTTAC 130621 32 100.0 36 ................................ AGCGTACTCCATGAAATTCGTATAGAACCAATGCAT 130553 32 100.0 33 ................................ ATAATAATCTCACAACGTAAACCAAACTTTACT 130488 32 100.0 35 ................................ TAGTTTATCAGTAACGTCTATTCTTAGTGTATGGT 130421 32 100.0 35 ................................ ATGTATAATGATATTTGTCTGTGAGGGAAACCAAC 130354 32 100.0 34 ................................ CGGATACTTGGTATCACTTACTGCTATAAAATGG 130288 32 100.0 36 ................................ TAATACATTAATAATCTTGGCAGGGGCTTTTAGCGA 130220 32 100.0 34 ................................ TTCTTAATTCGATTGCCCATTTTTCGTGTTTAGT 130154 32 100.0 35 ................................ AATTATAAATCTAGCTTTGGATAAGGCCAAGTCGA 130087 32 100.0 35 ................................ AATGCCACAGTAAGGGCAACATGTACGCATATAGA 130020 32 100.0 34 ................................ ATGGCAATGATGTTGGCAGCAGTTAAAGGGACAG 129954 32 100.0 37 ................................ CGATTGCAGCAAGCGGTTACTTCAATGCTTTCATGGT 129885 32 100.0 34 ................................ TCAAGAAAATAGTAAATGTGATTTATATTGTAGT 129819 32 100.0 36 ................................ TTGTTTTAGGAAGTTTGAAAGGATTGTTTACAGGTG 129751 32 100.0 35 ................................ GAAACTGGATTGTTATTTAAAGCCCGTCCTGATGC 129684 32 100.0 35 ................................ CTTTGTATGGCTGATCAACATGTTTCGCTGTCGTT 129617 32 100.0 34 ................................ CAATAGTGCAATATCTGAACGATACGCATCAACC 129551 32 100.0 36 ................................ ACGCAAACGATTGTCATAACCAATCCTGCTGCGTTT 129483 32 100.0 35 ................................ TCTGTTAGTGGCACATCATAACCTTTTTCTACCAA 129416 32 100.0 36 ................................ TGGTATTATTGACGCTATAATAAATTGTGCACTAAT 129348 32 100.0 35 ................................ TACTGTACTAAATAGTATATTCGTAGGTACATTAT 129281 32 100.0 34 ................................ CTACTATTTTTACTGGTACTTGTTTAGCCTGTGG 129215 32 100.0 34 ................................ TTCGTAAATCTCAGGTACATTTATGTCATAGGGG 129149 32 100.0 36 ................................ AATTACAATTAGTTAGGGATAGGACTAGATTTATTG 129081 32 100.0 34 ................................ TTTATGGCCCGCCCAAGGTGTGGCTATAGGTCCT 129015 32 100.0 35 ................................ TAGTTTATCAGTAACGTCTATTCTTAGTGTATGGT 128948 32 100.0 34 ................................ TCACACCACTCACCACTATTTATATATGATTTAC 128882 32 100.0 35 ................................ ATGGCCTAGTTGGATCAGGGAATTGCTAATAATTT 128815 32 100.0 36 ................................ TTGTGTCTCTATGTGAATTAAGAATAGTTGTCTTAG 128747 32 100.0 37 ................................ GGAAAATGATGATGAAATAGCTCTTGTGATAGGGCAT 128678 32 100.0 35 ................................ ATTTTATAGGCTCAGAAAATAATGATTGGGTTGTT 128611 32 100.0 35 ................................ AAGCAAAAACAAGGGTTACAAAAAGAAGCCTTGGA 128544 32 100.0 35 ................................ ATCTAAAGAGAGGTAAAGTAATGACTATTGAAGAA 128477 32 100.0 36 ................................ TTATCTAAAGCAATAAACTCTTGACGCAATGCTGTC 128409 32 100.0 34 ................................ ATATTTCGCAAACTTATAGAATGAATGTAAAAAT 128343 32 100.0 34 ................................ CGTCGTCTAAGACATTAAAAACTAGAGTTTTCAT 128277 32 100.0 37 ................................ ATAGGTATAGAAAAAGAAGAAAAATATTTCAATATAG 128208 32 100.0 34 ................................ ATCCCAAGGTAAAATAGCTTGCACATCATCATTC 128142 32 100.0 36 ................................ TTTGAGTTTGGTGATTAGGTCGTCAATGCCAATAGG 128074 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 128007 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 63 32 99.9 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //