Array 1 54033-53226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMZ010000102.1 Serratia marcescens strain A17 Contig_102_51.1138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54032 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 53972 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 53912 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 53852 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 53792 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 53732 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 53672 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 53612 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 53552 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 53491 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 53432 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 53372 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 53312 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 53252 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63805-62514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMZ010000102.1 Serratia marcescens strain A17 Contig_102_51.1138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63804 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 63744 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 63684 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 63624 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 63564 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 63504 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 63444 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 63384 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 63324 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 63264 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 63204 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 63144 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 63084 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 63024 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 62964 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 62904 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 62844 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 62784 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 62724 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 62664 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 62604 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 62544 28 96.4 0 ....................A....... | G,A,A [62517,62521,62523] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //