Array 1 220673-221698 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIMFN010000003.1 Streptococcus agalactiae strain DL03 DL03_Scaffold3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    220673	    36	 100.0	    30	....................................	TCGTAAAATGATAAGTAATACAATAACACT	
    220739	    36	 100.0	    30	....................................	TTGGAAAGATGGCAGAGGGGTTAACGCAGC	
    220805	    36	 100.0	    30	....................................	CCAGTTTAGAAACAGAACAAAACTAACGAA	
    220871	    36	 100.0	    30	....................................	AGACAAAGAAGATGGCAAGTCTATCAACAA	
    220937	    36	 100.0	    30	....................................	AGTAGAAACATAACGATAATTCCATGAATA	
    221003	    36	 100.0	    30	....................................	ATGTTGTAGAATCATATCGACCATATAACC	
    221069	    36	 100.0	    30	....................................	GCTTGGTCTCGAAGAATTACAGAAGAACAT	
    221135	    36	 100.0	    30	....................................	CAATTGATTGCCGTTAAAACCGATAGAGGA	
    221201	    36	 100.0	    30	....................................	TGAATTCCACGCCACCAAGTAAACCTGTGA	
    221267	    36	 100.0	    30	....................................	ACAAGAAACAAACAGCCTTGATGACTTAAT	
    221333	    36	 100.0	    30	....................................	GGGTCCAAATCAGCAATCTATGCTAAAAAT	
    221399	    36	 100.0	    30	....................................	CAATTGATTGCCGTTAAAACCGATAGAGGA	
    221465	    36	 100.0	    30	....................................	TGAATTCCACGCCACCAAGTAAACCTGTGA	
    221531	    36	 100.0	    30	....................................	TTCTATCTTCTGAAGATATTTCACAAGTGA	
    221597	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC	
    221663	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA
# Right flank :  CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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