Array 1 5323-7302 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVZ01000019.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5722 NODE_19_length_90902_cov_50.471242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5323 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 5384 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 5445 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 5506 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 5567 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 5628 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 5689 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 5750 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 5811 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 5872 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 5933 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 5994 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 6055 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 6116 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 6177 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 6238 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 6299 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 6360 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 6421 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 6482 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 6543 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 6604 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 6665 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 6726 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 6787 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 6848 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 6909 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 6970 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7031 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7092 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7153 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7214 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7275 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23875-25734 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVZ01000019.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5722 NODE_19_length_90902_cov_50.471242, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23875 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 23936 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 23997 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 24058 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 24119 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 24180 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 24241 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 24302 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 24363 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 24424 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 24485 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 24546 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 24607 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 24668 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 24729 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 24790 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 24851 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 24912 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 24973 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 25034 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 25095 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 25156 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 25217 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 25278 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 25339 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 25400 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 25461 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 25522 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 25583 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 25644 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 25705 29 96.6 0 ............T................ | A [25732] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //