Array 1 998277-996600 **** Predicted by CRISPRDetect 2.4 *** >NC_013124.1 Acidimicrobium ferrooxidans DSM 10331, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 998276 29 96.6 32 ............................C CCGATCCTCGACGCCCTCCGCGCTGGCGACCC 998215 29 96.6 32 ............................T GGTATCTGTGTGCTGCACATGGTGGTCAAGTA 998154 29 100.0 32 ............................. ATCCAGCCCGGCGACAGCCCCCAGGCCACCGT 998093 29 100.0 32 ............................. CACCTCCCGAACTGGGTGGCGAAGGACGCCGA 998032 29 100.0 32 ............................. CTGAGGCAGCCAAGGCCAAGGCCAAGGGCGAT 997971 29 96.6 32 ............................C GCAGCGGAGGTCTACTGTCCTGAGCTGCCCAA 997910 29 100.0 32 ............................. ACATTCCTGGCTCAGCGCGCCGCGCAGGTGAG 997849 29 100.0 33 ............................. TGAGCAGAAAGGAGACAGAAGTGGGCATTACCG 997787 29 100.0 32 ............................. CGCTCTACCCACGAGCGCATCTCTTCACGGGT 997726 29 100.0 32 ............................. GCGTCGCATGCAATACTCCCCGTCGGGCTTTT 997665 29 100.0 32 ............................. CAGTACCTTCGGCCTCACGCCGCTGCAAAGCG 997604 29 96.6 32 ............................T TCTCGGTCGCCAACCGAAGCTTCTGATGGTCG 997543 29 100.0 32 ............................. CCGCGTGGCGTTACATGAGCAATCCGCGCGTG 997482 29 100.0 32 ............................. AAGCCGAAGCCCGACGACGTGGTGGTGGTCGT 997421 29 100.0 32 ............................. CGCGTTGAGGATGGATCCGTACCACCCCGCGT 997360 29 96.6 32 ............................C CAGCTCCCCGAGGGCGTCCTTGTGTGGGATCT 997299 29 100.0 32 ............................. GTACGTGGATTGCTGGAGATTGAGGGCAAGCT 997238 29 96.6 32 ............................A CCTGGGCGCTCGCCAGGTTCGGTGGATAGATA 997177 29 100.0 32 ............................. ACCCGCTCGCGTCGGTGAGGGGCACCCACGTC 997116 29 96.6 32 ............................C GAAGATCGCCTGCGGCTGTCGGTCGCGGCGGG 997055 29 96.6 32 ............................T CAGCAGGACTCAAGAAAGGACGCGATGACGGA 996994 29 100.0 32 ............................. GCGACGCTCGACTGCTGGATGGCCAGGTTCTG 996933 29 96.6 32 ............................C GGCCAGACCGAGATTGAGGGGATCACCGTCGA 996872 29 96.6 32 ............................C CGTACTTGCGCGCGGCTGGCCGCGTTGACTGA 996811 29 96.6 32 ............................C TCCTCGGGCGTGCGGACGAGGAGTGCGTTGGG 996750 29 100.0 32 ............................. CCTGAACTTGCGCCTGGCTCAACTGGATTTCG 996689 29 100.0 32 ............................. ACCTCGGTGTGGTCCGTGACGTTGCTGGCGAG 996628 29 86.2 0 ........................TGTA. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.2 32 GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Left flank : GTGGCAGATCTTGGCTCGAGGCGCATCGTGGGCTGGTCACTTGGGCGTCACATGCCCGATGACCTGGTGGTCGAGGCGATCCGCGAAGCACTCGGGACTCGGGGCAGCCTGGCTGGGGCGATCTTTCACAGCGATCGCGGCAGCCAGTACCTCTCCCGGAAGGTACGGAGCCTGCTCGCGACCCTTGGCATTCGCCAGTCGGTGGGGAGGGTCGCGACCTGCTACGACAACGCCGTGGCCGAGTCCTTCTTCGGGAGCTTGAAGCGCGAGCTGGTGGCTCGCTACCGCTTCGCGAACCTCTCAGGGGCTCGCTCTGCCATCGCTAGCTGGATTCACCGTTACAACACGGTCCGCCTGCACTCAAGCCTCGGGTACCTACCGCCCGTCGAGTACGAGCTCTCCTGGGCCTGCCGGGAGGTGGCCGTGGCCTAAATTCAGACTGTCAAGCAAATGGGGGGAAGCCCACCGGTCGTCTGTCCGGCGATCTGGAGGTCCCACGT # Right flank : GCACCGGCCTTCTTTTGACCCGGGATCACCGGTCAGAAGTGACCCACCCGCGACACAGCTATAGGGACTAGCTCCCCAGATCGTGGTGCTCGGCATCACCTCCCTGCACCATGACCTCCGGGGCAAGCGGAACCTTGTCACCGGGAGCCGCTGCCCAATGGGAGTCCCATTGCCATGGACGCCTTGCGAGTCTCGCTGCCCCTTTGGATGTCAATCGATTCACAAGCCGCACGGGGCAACATACGACAGAAGTGGTTCCGCTGACCGGCCCGGGACCACTGGGGACCATCCAGCCGAATACCGCGCCTGGGTACCGACCCCTCGTGAGTCAGCCAACCCCTCCCCCACGTACGACCAGCTCCGATCCTTCCACCACCACAGCGAGCGAACGGAGTGCCCGGTCAGCCGGACCACGCACGCGCTCCCCGCTCTCGCACGAGAACTGCGAGCCGTGCGCCGGACACGTCAGCACACCCTCCTCGCACGGGACCCCGGCAAGA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1003349-1000879 **** Predicted by CRISPRDetect 2.4 *** >NC_013124.1 Acidimicrobium ferrooxidans DSM 10331, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1003348 29 100.0 32 ............................. GTGGCAGAAGTGACTACCTACACAGACGACAT 1003287 29 100.0 32 ............................. GGATGACTGGTAAGTACGGGCCGCACACGGAA 1003226 29 96.6 32 ............................T CGAACCGGGCCGACGTTGGTCATGTGGGTTGG 1003165 29 100.0 32 ............................. CGGAGACTCCTCGAGCTCTTCCCGAGTGAGAC 1003104 29 96.6 32 ............................T TCGGGATACTCTCCGATCTTCGGGACTATCGG 1003043 29 96.6 32 ............................C ATGGCCAACGCACTGCGACAGCAACGGGAGCA 1002982 29 96.6 32 ............................C TGGGTCAGGTACGGGCCAGTGAAGGCAATGTA 1002921 29 100.0 32 ............................. GCGGTATCCATCATCAGAGAGTCTCAGGCTGA 1002860 29 100.0 32 ............................. GAGGCAGTGGATGGTGAAGTAGTCAAGATTCC 1002799 29 100.0 32 ............................. CTTGGCCTCGCGGGTGGGGGGCACGCGGTTGA 1002738 29 96.6 32 ............................C TCGGACAAGCTCAGCTTCTCGGGCGACTGGGG 1002677 29 96.6 32 ............................C CTCGTGCCTGGTGACGACCCGCAACGCGAGCT 1002616 29 96.6 32 ............................C CCTTGCTCGGAGCACATGCACCTCGACAACTC 1002555 29 96.6 32 ............................T CACCACGCCGAAGAAGGACAGAATCACGACGG 1002494 29 100.0 32 ............................. AGTCGCCTCAGGTAGTCGATCTGTCAACTGAC 1002433 29 96.6 32 ............................T CCGACTCAGTACGCATTCTGAAGCTGAACTTG 1002372 29 96.6 32 ............................T CTGAAGAGCATGAGAGCAGTCATCGATAGCAG 1002311 29 96.6 32 ............................T GCTCATCCGCAGTACCCCCTCGACGCTATGGT 1002250 29 96.6 32 ............................C TGAACGCCGACGACGCGCAGGTCGCCACGGCA 1002189 29 100.0 32 ............................. TCGATGCGCGGATCAGCACTGGTCTGCATCAA 1002128 29 100.0 32 ............................. CCAGCCAGAGCTCGTCCGGGTCATCAACGCGA 1002067 29 96.6 32 ............................T GCTTCCCGGTTGGATCGTGATCGGTAACGGCG 1002006 29 96.6 32 ............................C CAGTGGGCTGCGTTGCCCCGGGCAACGAACGG 1001945 29 96.6 32 ............................C CAGCGCCCTCAGCGATGAGCACGGCCCCTACC 1001884 29 100.0 32 ............................. TGGGGACGAGAGGACGAAGAGGGAGGAGCGAG 1001823 29 100.0 32 ............................. ACGATTGTGGAGAACCTCGGGGTCAACGAGGT 1001762 29 96.6 32 ............................C GATCCGGTCGATGGCTACGGGATCGGCGGGCA 1001701 29 96.6 32 ............................T TTTTCCCCCAGTGCCCCTGAGCTGGGACTTCG 1001640 29 96.6 32 ............................T ACTTGGCGGGGAACACGATCACGAGTTCAGCA 1001579 29 100.0 32 ............................. ACTTGGCGGGTCGTGGTGAGGCCGGTGAGGCC 1001518 29 96.6 33 ............................A CGCTTGGTCGACAGCTCCCCATGGCTTATCGCA 1001456 29 96.6 32 ............................T CCTGAGCATCACCACATACCATGTGACGTTAG 1001395 29 100.0 32 ............................. TTGCAGGTCGGCTCGTCGCTCGTGCTGTTCGA 1001334 29 100.0 32 ............................. ATATACAAGGCAACCAGAGAGGTCGCCGACGG 1001273 29 96.6 32 ............................C GGGGTCTCCTCAAGACTGACCACTGAGTAGCC 1001212 29 100.0 32 ............................. AGGTCCGCGATCCGGTCGAGAGCGTCACCCTC 1001151 29 96.6 32 ............................C TCGCATTGGGGTACCTCACCCGCCACCCTCAA 1001090 29 100.0 32 ............................. GTCGTCTGTCCGGCGATCTGGAGGTCCCACGT 1001029 29 96.6 32 ............................C CCGATCCTCGACGCCCTCCGCGCTGGCGACCC 1000968 29 96.6 32 ............................T GGTATCTGTGTGCTGCACATGGTGGTCAAGTA 1000907 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 98.0 32 GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Left flank : CAGCGAACGGGAAGTCTGTCGAGTCAGGTCCGACGAACGATGCGGGAACGGATTCACGAGGCACATCTCCTCGAACGAGCCGTCGACGACATTCGTCTCTTGCTTGGTACGCCAGATGCCGACCTTGGGGGCGAACCCGGTCTCGTTCTCTTCGACGATCGCATCGGCGAGGTCCCAGCGGGCACCGACTACAGCTCCGACGTATGACGGTTCTCGTGCTTACCGCTGTCCCCGTTGGGCTCCGTGGCCACATCACCAGGTGGCTGCTCGAAATCGCTCCTGGGGTCTTCGTGGGAACCGTGACCGCCCGCGTTCGTGACCTCATGTGGCAACGAGTCAACGAGCACCTGGGAGAAGGCGGCCGAGCGGTCATGGTCTACCCCGCTCGCAACGAACAGGGCCTTGCCTTCAAAGTCGTAGGCGGCACATGGGAGCCCGTGGACTTTGAGGGACTTACACTTATTCGCAAGCCCAGCCGGTAAACATCCATGTGGTGAAGT # Right flank : TGGCCTTCCCCCCTCCAGGTTGACACCTGCTATAGGAGGAAGGGATGAGCCAGACACCGAACCCACCACCGGGCGACGGCCCCGCTGGACGACGACGCGGCCGCTACCCGAGCCAGTTCCGCAAGGACGCGGCAGCGTTGGTTCTCGACCAGCGCCGCACCATCGCTGACGTCGCCCGTGAGCTTGGCATCAACGAGCAGACCCTTGGTAACTGGGTCCGTCAGGAACGCATCGACCGAGGTGAGCGAGAGGGCCTGACGAGCGCCGAGCGCGAGGAGCTGACACGGCTGCGCCGCCAGGTCAAGCAGCTCACCGTGGAACGCGAGCTGCTCAAGCGAGCGATGGCCTTCTGGGTGAAGGAGGGGGGACAGTGAGCCGCTACCACTGGATCTCCCGCCAGGAGGCCAAGGGCTTCTCTGTAGCGGCAGCAGCACGATGGCCTTCCCCCCTCCAGGTTGACACCTGCTATAGGAGGAAGGGATGAGCCAGACACCGAACCC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //