Array 1 1105569-1104741 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WNIX01000001.1 Streptococcus agalactiae strain 230 NODE_1_length_1535701_cov_170.212806, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1105568	    36	 100.0	    30	....................................	AGTTATCGATATAAAAGCTAGACTTGTTAT	
   1105502	    36	 100.0	    30	....................................	TTAATCACGTTCGATTCGTGATGGGTCTAT	
   1105436	    36	 100.0	    30	....................................	AGACTTAGATTCTATTCAAGACATGGTTTT	
   1105370	    36	 100.0	    30	....................................	GCATTCTTAGATAAAATCATTTCTCCATTA	
   1105304	    36	 100.0	    30	....................................	TGTCAACAGTACGTGAGACGAGTGTGTAGG	
   1105238	    36	  97.2	    30	..............T.....................	TGAAGTTGATGGATATGTTGATTTAGAGCT	
   1105172	    36	  97.2	    30	..............T.....................	TTTAAAGAGATATCTGTTTCATCTTGCGGA	
   1105106	    36	  97.2	    30	..............T.....................	AATCACTTCTGCATAAATATCTTTTACTTC	
   1105040	    36	  97.2	    30	..............T.....................	AAACATCCGCAACGGGATAAATAAAGCTAG	
   1104974	    36	  97.2	    30	..............T.....................	AGTTTCTTGTGGGTTAGCTTGTCCACCGTA	
   1104908	    36	 100.0	    30	....................................	GAACATGAAAGATTTTAAAAAAGAACATTT	
   1104842	    36	 100.0	    30	....................................	AGAGGGGAAAATATCAATGCCGAATGCTGA	
   1104776	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  98.9	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//