Array 1 183802-185781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWW010000016.1 Erwinia amylovora strain 241/07 Ea_241_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183802 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183863 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183924 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 183985 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184046 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184107 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 184168 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 184229 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 184290 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 184351 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 184412 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 184473 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 184534 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 184595 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 184656 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 184717 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 184778 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 184839 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 184900 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 184961 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 185022 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 185083 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 185144 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 185205 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 185266 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 185327 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 185388 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 185449 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 185510 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 185571 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 185632 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 185693 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 185754 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 196689-198794 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWW010000016.1 Erwinia amylovora strain 241/07 Ea_241_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196689 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 196750 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 196811 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 196872 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 196933 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 196994 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 197055 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 197117 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 197178 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 197239 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 197300 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 197361 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 197422 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 197483 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 197544 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 197605 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 197666 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 197727 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 197788 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 197850 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 197911 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 197972 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 198033 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 198094 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 198155 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 198217 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 198278 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 198339 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 198400 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 198461 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 198522 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 198583 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 198644 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 198705 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 198766 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 208258-208586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWW010000016.1 Erwinia amylovora strain 241/07 Ea_241_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 208258 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 208318 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 208378 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 208438 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 208498 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 208559 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //