Array 1 39589-37903 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEQD01000080.1 Neisseria meningitidis N1568 menX.contig.79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39588 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 39522 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 39456 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 39390 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 39324 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 39258 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 39192 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 39126 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 39060 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 38994 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 38928 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 38862 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 38796 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 38730 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 38664 36 100.0 30 .................................... GTGCATTCTGCCTCGTCGGCTGGTACGTAA 38598 36 100.0 30 .................................... TCAGTTGTTTGATTTAAGCAAGATTCCTGT 38532 36 100.0 30 .................................... GCGTAGAACAACCGGCAATGACTAATTTTG 38466 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 38400 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 38334 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 38268 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 38202 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 38136 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 38070 36 100.0 30 .................................... TCATAATCGTATAGGTAAATGTCATCGACA 38004 36 100.0 30 .................................... CCTACGCACGGGGTTGTCCAACTTTTGTAT 37938 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAACATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //