Array 1 63769-60966 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHM01000023.1 Moraxella catarrhalis strain N15 B622ctg29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 63768 28 100.0 32 ............................ AAGCGTGAGCCACACACAGGTGAAGAGCGTGC 63708 28 100.0 34 ............................ GTGCTGGTTGCACTACTTGGTCTGACGATGATTG 63646 28 100.0 32 ............................ AAAACCCAAAGCCCACACGCCAAAAAACAAGG 63586 28 100.0 32 ............................ ATAATAACTACTGCGAACATACTATTCTCCTC 63526 28 100.0 32 ............................ TATTTTGTTCTGTTAAAATTGCGGTAATGTAT 63466 28 100.0 32 ............................ ATTCGTCGATAAATTCTTTAACACCTTGCATG 63406 28 100.0 31 ............................ GAAGAAAAAGTTTATCGCCTTTATGATGGCA 63347 28 100.0 32 ............................ TATTAGAAAAAATTTTTCAAAAATCATAGCAT 63287 28 100.0 32 ............................ TATAAAGAACATATCTTATCAATTCCCCGTGA 63227 28 100.0 31 ............................ TGTATTTATATATTAGATGATAATTCAAGGA 63168 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 63109 28 100.0 32 ............................ GCCGACAATACTACCTTGATAATCATTAGCCA 63049 28 100.0 32 ............................ TATCGCTAAGGCAGGGTTTAAATACCATTCAA 62989 28 100.0 31 ............................ TAAATTTCACTTACTACAAAACAAAAAGGGA 62930 28 100.0 32 ............................ ACCCCAAGATGTAGATTTACCCCTTGCCACCG 62870 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 62810 28 100.0 32 ............................ GCTGATGACAATCACCAATTTACCATCACCGC 62750 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 62689 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 62630 28 92.9 32 .............T....T......... ATTCATTGCCAAACCTTTGATTGGTACAGTCG 62570 28 100.0 32 ............................ CAGTCGAATTCACCATGCCAAACGCCATTTTC 62510 28 100.0 31 ............................ ACGGGCGAAATTCCACCCAAATTCATGCCAA 62451 28 100.0 31 ............................ AATCAAAAATTTTTGACGACTTATTTTTTTG 62392 28 100.0 32 ............................ AGCGTATCAACACCTTGCAAAGCGACTATAAC 62332 28 100.0 33 ............................ ATTGTGGGTTAATGTCAGATTTTCCCTTGAGTT 62271 28 100.0 32 ............................ GTATTTAATTTCTACAACTGCGCCTGATAATT 62211 28 100.0 32 ............................ CTAAATTCATGCCAAATAATACCCCCTGTACG 62151 28 100.0 32 ............................ AATCTTGAACGAACGCTAACAACAAACAATCA 62091 28 100.0 32 ............................ GCTCAACACTTGTCGCCTGTCTGCTTTGGGTT 62031 28 100.0 32 ............................ ACAGTTCATTATTACCACCTGTGCCGACATTC 61971 28 100.0 33 ............................ TCCTTCAAAAATAGCGAAAATAAGCGTTTTAGC 61910 28 100.0 34 ............................ AAAGCTAAAGGCGGCGCAAAAAAGTCAAACACCG 61848 28 100.0 32 ............................ ATAGCAGTATATCCGAATCAATAACAGTATAT 61788 28 100.0 33 ............................ AGTAAATCAAGAAAAGTAGTCGAGAAAATACTT 61727 28 100.0 31 ............................ AACAAATATCATTACCCCAAGCCGTGAAAAC 61668 28 100.0 31 ............................ CCACACTTCCCACCCTGATTATAAAAAGCCC 61609 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 61549 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 61489 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 61429 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 61369 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 61309 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 61249 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 61173 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 61113 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 61053 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 60993 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================================ ================== 47 28 99.5 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCATCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGAAGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //