Array 1 185141-185828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFD010000001.1 Pectobacterium brasiliense strain IPO:4068 NAK:256 DLACAPHP_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185141 28 100.0 32 ............................ CTTGCCCGGATGTAATGGCCCGCAATGGAATT 185201 28 100.0 32 ............................ GGCATGACTCCATTTAAAGGTTCAGACCATGA 185261 28 100.0 32 ............................ GCCATCGGCATCACGCTGAATCCAGCACAAAA 185321 28 100.0 32 ............................ AAGGTCAGGGGTTCTTTTTCCAGTGAGGATAT 185381 28 100.0 32 ............................ TCAACGACAACGCGGGGGATTTGATACTTAGT 185441 28 100.0 32 ............................ AATTTCAGCCAGCAGATTGCCTACATCAACAA 185501 28 96.4 32 ...............G............ TCTGCTGTGTCGATATCCAGCATCTGCTGTAT 185561 28 100.0 32 ............................ GGGCCTTGCTGACTGCCAGAACGCCCCAACCC 185621 28 96.4 32 ...............G............ GTTAATCAATAATTCAATCCGCAGCACAAAAA 185681 28 96.4 32 ...............G............ GGGAAAATCGCGCCTTGAGTTTTACGACGCAC 185741 28 89.3 32 ............G..G......C..... TAGGACCTATTGACTCTTAATCAATTGGTCGC 185801 28 82.1 0 ...........A.C.G....T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 96.7 32 GTTCACTGCCGTATAAGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAACACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAACATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAGTTTATATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAATGTACCTAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACACGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAAGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 194753-191720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFD010000001.1 Pectobacterium brasiliense strain IPO:4068 NAK:256 DLACAPHP_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 194752 28 100.0 33 ............................ AAAGCTTCCAATTACAGGAAACCGAACCACAAA 194691 28 100.0 33 ............................ GACATAAGGAGCAACTTTGGGCCACGGACTTAC 194630 28 100.0 32 ............................ AGGCGGTATTGAAAATGCGCCGTCAGTTGGCA 194570 28 100.0 32 ............................ ATCATTATTAACTTGCGCTGATCCTGCTGCAT 194510 28 100.0 32 ............................ TGAAGCGCAAAGCGCGAGAAATGGCGCTTGAG 194450 28 100.0 32 ............................ CGAATCAACGCGTAATGATGATAACGCACGTT 194390 28 100.0 32 ............................ TCGCCGTAGATGACATTGATATCGCCGTCCAG 194330 28 100.0 32 ............................ TGGCGGGCTGTTGAAGGTATCAAGTACAAATA 194270 28 100.0 32 ............................ ACACGGGCGGTATAGCCGGGGTCGGCTTCAAT 194210 28 100.0 32 ............................ TGTCTGAGGATTTGGCAGAGGTTCGTTTCGTT 194150 28 100.0 33 ............................ ACAGGGTGTAGGGAATAAAGATGTCCGGGTTAT 194089 28 100.0 32 ............................ TAGTACCGGCTATCGCCCCCCTTCGTGCAGCT 194029 28 100.0 32 ............................ AGCGAGGCGTAAATCGTGATTTTGCGTGTGGG 193969 28 100.0 32 ............................ GCTCGGGATGTTCTCGCCTGCATGCCAGCCAG 193909 28 100.0 32 ............................ ATGCAGCGATAACGAGGCCGTCCGGTGATTCT 193849 28 100.0 32 ............................ GTTTCATGCTGCTTTCTTTAGTCTCCATCGTG 193789 28 100.0 33 ............................ GAACAGATAAGAAATAAACGCCTGTTGACTTGT 193728 28 100.0 32 ............................ TTGGCAAACAAATACAAAACACACTCTATAAC 193668 28 100.0 32 ............................ ATGCTGAAGGATGAAAAAGCCAAAATGCCAAT 193608 28 100.0 32 ............................ ATGATGGTTAGATCGCTGCCCTGATACCCGTC 193548 28 100.0 32 ............................ AGAAACAGGCGTGTTACGCAGTGATTCAGGGA 193488 28 100.0 32 ............................ ATTCCCCCAACAGTCACCAGTTCACCGTTTGA 193428 28 100.0 32 ............................ ACCAACAAACAGAAGCGCATTCTTGATGCGTT 193368 28 100.0 32 ............................ TCAAACCCACGCCACCACTGGTCTCAGCACTG 193308 28 100.0 32 ............................ TCCGGCGAATCTAATTGCTGACAGAACGTACA 193248 28 100.0 32 ............................ GCTAACTAACTGCCTGGACTTTATTGAACTGG 193188 28 100.0 32 ............................ GCAAATTTTTCTCGCTCTTAAATCTTGGATTC 193128 28 100.0 32 ............................ GGGAACAGGTCAGCGCGCCCCATTGCCAGCGT 193068 28 100.0 32 ............................ AAATGCTCATTCAGCACCACCTTTAACAAAAA 193008 28 100.0 32 ............................ AACAAGCAAAATCTGGCTGATGTGGCCGAGCG 192948 28 100.0 32 ............................ TTTAAAGCCTGCTGCTAACAACGCCCGCTCTT 192888 28 100.0 32 ............................ TGAAACTTTAGTATGCATTGATGCTGTATTGC 192828 28 100.0 32 ............................ AAACATCAACGCTAGAATAATCTTTATAAAAG 192768 28 100.0 32 ............................ ATTGCGACAGGGTTGTGATTCATTGCAATATG 192708 28 100.0 32 ............................ CAAGATATTATCGGCGTGGGTCTTTAAACCGT 192648 28 100.0 32 ............................ TTCAGGGGCTTACCGCACTGCCAAACGGCATG 192588 28 100.0 32 ............................ AATTGACGACATGGAGCTAACCGTTCAATTAG 192528 28 100.0 32 ............................ GTTAAGAGCGGAGCATGTTTTCGGTTCAGCCA 192468 28 100.0 32 ............................ ACGGGCGTGATAAATCTCATCCACAAGGTCAA 192408 28 100.0 32 ............................ GAACAGCAACCTCAGCAGCAAACTGTAACGCC 192348 28 100.0 32 ............................ TCACATGACCGTTCTTAAATATGGCCATAGCG 192288 28 100.0 32 ............................ AAATACCGGGATACGCATATTTTCGCGGTAAA 192228 28 100.0 32 ............................ ACGATCAAAAATTCCGTTAATCGCGAACGGAG 192168 28 100.0 32 ............................ GACGTTGTCACGTCCCTGGCATCAGGGATGCC 192108 28 96.4 32 ...........T................ TCTTTGCGCCCCGCTTCACTTGCCGCATACGC 192048 28 96.4 33 ...........T................ GGTAACGACGAACCCGCCAACGGCCAACCGGAT 191987 28 96.4 32 ...........T................ CCGAAAATCATACGGGCAGATAGCGTGGCGGT 191927 28 96.4 32 ...........T................ TTTTTCAACTTCTGCTTTCAGCACTGGAGCGC 191867 28 96.4 32 ...........T................ CGTATGGTGCGACGGAATTATAAGTTCTGGGT 191807 28 92.9 32 ..C........T................ GTACCAGCATGACTCGCCCGCCCCAGACTCAC 191747 28 75.0 0 ...........T.C......T...TCCG | ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAGTAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAATGAAAATCAGATTATCACAGTTGTATATAAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCACTATCGTCAGTGTTTGATGCGTTATCGTCTTTAAATAACGTATTTTTGACTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTTTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTATCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 203736-205143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFD010000001.1 Pectobacterium brasiliense strain IPO:4068 NAK:256 DLACAPHP_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 203736 28 100.0 32 ............................ AACGGGAACAGGTAAAGAAGCTATTGCGAGCG 203796 28 100.0 32 ............................ TTGCCTAAATAAATTCCGTTCTTTTCTCCACC 203856 28 100.0 32 ............................ GTCAACAACTTCGTTTTCCTGCGGGAACACTT 203916 28 100.0 32 ............................ TACGCTTGAAGACGCGCTCGACATCATAGCTG 203976 28 100.0 32 ............................ AACCGTCAAATTTGTTGAGGTTCCCGATTCAA 204036 28 100.0 32 ............................ GAACATGCCCGAATCGGTATATCCCCCAAAGA 204096 28 100.0 32 ............................ AAAGATTTGGATTTACTGACGGAGAAGGCCAG 204156 28 100.0 32 ............................ CCTGCCTGTAGTGTCTGATGAGCGTGCAGCGT 204216 28 96.4 32 ...........T................ TGCGTCCGTACGGTTTCCGCGTCGCAGAGCCG 204276 28 100.0 32 ............................ CTGTTTTAATTTCAGCGTGAGGAACCGTCACC 204336 28 100.0 32 ............................ AAACGCGTCGGCCATTTGTGCCTGTCCTAACA 204396 28 100.0 32 ............................ TGGTGTTTAATGTCCCGCACGCGCAGGGCGGC 204456 28 100.0 32 ............................ AACCGCAAGAGACAGCCGAACAACAACCTCAA 204516 28 100.0 32 ............................ TCGCCAGGCTCGGCGCTCACTGCGTCCCCCCG 204576 28 96.4 32 ...........T................ AGTTTAGCTGCGTCAAAGCTGCGTGGATCATT 204636 28 96.4 32 ...A........................ AGCGAATCAAACTGCTGGGATTTTAACGGGGT 204696 28 92.9 32 ...........TG............... GGATCATGCTCAACACTCGTGGCGTAGTAGCA 204756 28 96.4 32 ...........T................ TGCGCTGGCGCTCATCAGCGTTATGCCTCTTT 204816 28 92.9 32 .............C......A....... TCATCATCGCACGTCGCGCTAACTTACTGTTT 204876 28 85.7 32 ...T.......TG....T.......... AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 204936 28 96.4 32 .............C.............. ATCAATGGTGTATTGTTTGAGGGCATCACGGA 204996 28 100.0 32 ............................ GGAGGGATTAGCTAATGGGCTGGATTAAGTGC 205056 28 92.9 32 ...........T........T....... GGCTTCTCCGCCGCCTCACGGCGCTGTAGTAG 205116 28 75.0 0 ...........TGC......T.C..TG. | ========== ====== ====== ====== ============================ ================================ ================== 24 28 96.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGTTAACGGAAGCAGAAGCCGCAGCACGAATTCCCGATGCCGTAGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCATTCCCTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAGGGTTTTTCGAGATAAAATGAGTATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ATTATCGAAATGCGTCGCTGCCGCGACGCATTTTTGAGGACTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTTCCGAGCAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGACGGTAATACGGCTCATCCTCCGGAACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCATCAGTCACCAGATGGAAGCCCCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //