Array 1 54934-54666 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLB01000007.1 Klebsiella oxytoca strain FDAARGOS_432 pBCCDC_6.contig.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54933 28 100.0 29 ............................ TCAATACGGGTGTGAATTCCTGAACGATA 54876 28 100.0 33 ............................ GGCTGGCGAACGCTCAAGGCTGGTGGAGTGAAC 54815 28 100.0 33 ............................ GTATCAATAGCCCATTGATTTTCCTGACTGCTG 54754 28 96.4 33 .............C.............. ATACTGATACTAAAACGGGATTTTCGTTGTTTC 54693 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 32 GTGTTTCCCCTGCGTGCGGGGGTTATCG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGTATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACACTGCCAGAAGGTATTATTGACGGTCGAGAGCTGGTGGAGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCCTTGATGAAGGAAATGTGTTCGGGAGTCAGGCTTTGTTATCGGTAGCGGCGCCCCTGAAAAAATGCGGTGTCGTGTTTACTGCTCAACGTCTGAAAAATGCAGAGAGCCTCGCGGCAAGTTTAATGGCGCGGCATGTGCTGATTTTTTATATCGGTGAGTATGAGTCTTTTAAGTTTGAAGTTGCGGCACAGTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTTCATTTGTAATCAATAGTATATAGTTAGA # Right flank : GGGCTATATCGAACGCGTTAATGGGAAGTGATTTTCAGGGAAAAACATTCGCTCGCAAAATTCCTATAGCAAAAAACGGTTCGCCGGTTTTTTTTGTGCCTGCGGTATTCGGCCTCTCTTTTGCGGCAGGGATAATACATCCCTGCGAAACTACTTAAAGAAGGTGACGATAATGACTCAGGTTCAGAAAGGTAAAACGGTTCCCGTTCGGCCACCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCAGCGGCAGACGCTGCGATTGATGCTTATCGAGGTGAAGCATGTGATGGCTGGTCTGATGAAGTGACCAGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACCAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 2221147-2221354 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLB01000004.1 Klebsiella oxytoca strain FDAARGOS_432 pBCCDC_6.contig.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2221147 28 100.0 32 ............................ ATCCCCACGGAGGCCAGCGCCTCCCGGCTGTT 2221207 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 2221267 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 2221327 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTAATATTTTTATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2234614-2236503 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLB01000004.1 Klebsiella oxytoca strain FDAARGOS_432 pBCCDC_6.contig.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2234614 28 100.0 32 ............................ ACGTAATGAGCGCTCTGGCGGAAATGGAAAGA 2234674 28 100.0 32 ............................ TACAAAAATTCCTTATAATCCGTCTACTAATG 2234734 28 100.0 32 ............................ GAATTAACAAGAAGTTTATGGACGCGAGCCTA 2234794 28 100.0 32 ............................ TTTAATGTTAAAGCGCTTGCTGTTGCATAGCT 2234854 28 100.0 32 ............................ ATTTCACAATTAGGCGGTAATTCAATTTCTAG 2234914 28 100.0 32 ............................ ATTCGGTGACCGCGTTTCGGAATCGTTGTCAG 2234974 28 100.0 32 ............................ CCGACCGCGCCCAGCATGCCGCCGCCCTGATA 2235034 28 100.0 32 ............................ TCATAAAAAAGGCCCGCATTTGCGAGCCTGTT 2235094 28 100.0 32 ............................ GGAAAATATGACGGTATAGGTTTTGTATTAAC 2235154 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 2235214 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 2235274 28 100.0 32 ............................ GTAATGCGCCGGCGGTCGCGCTTGCGCATAAA 2235334 28 100.0 32 ............................ GATGCTATAGCCGCAATGAATACCGGAAAATA 2235394 28 100.0 32 ............................ TTTAATAATGATGTGTAGGCCATTACCAGAAG 2235454 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 2235514 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 2235574 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 2235635 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 2235695 28 100.0 32 ............................ AATTACGACAGGGACGATACGAATTACTTCAC 2235755 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 2235815 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 2235875 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 2235935 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 2235995 28 100.0 32 ............................ GGCAACTGGCAGAATACGCTGACCGGGCAGCA 2236055 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 2236115 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 2236176 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 2236236 28 100.0 32 ............................ ATGCACCGGAAGAAGAACGCTGATCAATTGCC 2236296 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 2236356 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 2236416 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 2236476 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTTTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2244932-2245439 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDLB01000004.1 Klebsiella oxytoca strain FDAARGOS_432 pBCCDC_6.contig.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2244932 28 100.0 32 ............................ TCGCCCCGCAGCGCCAGCCGTGCGGCCAGTAC 2244992 28 100.0 32 ............................ GGAAGAGGAAGCCGGTTCCGTGCTGTCTACTG 2245052 28 100.0 32 ............................ CGATTAACACCAAAATTTAATTGGTAATTAAA 2245112 28 100.0 32 ............................ ATACTTTCCGGCGGCATGCTGCCCGGGCGCCA 2245172 28 100.0 32 ............................ AGAATTCTGGTTATGAAGTAATCGGTGATTAC 2245232 28 100.0 32 ............................ TCAAGCGGCGGGACCGGGCTGTAGCTGTAGCG 2245292 28 100.0 32 ............................ TGGATATTCGCATCGCCAGAAAGATAATAAGC 2245352 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 2245412 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTAAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCCAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGATTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //