Array 1 188205-182186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQG010000002.1 Bifidobacterium polysaccharolyticum strain W8117 NODE_2_length_593412_cov_301.146341, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 188204 29 96.6 32 ............................G AAGTATGACGGCAAAACCAAGGACGGCGTCGT 188143 29 100.0 32 ............................. CATCCGATGGCGACTATGAATGCTCATGGCAA 188082 29 100.0 32 ............................. CACGCATACTTGATAGGTTCCAAACGTTCCGC 188021 29 96.6 32 ............................C ACGTTCAAGACCGACGTTGATGGCAACACAGC 187960 29 96.6 32 ............................C TTGGCCTGAAGCACCTTGTTCTGCTGCTGCTC 187899 29 96.6 32 ............................C GATATTACTGCCCATCTCACTGATTCTATCCC 187838 29 96.6 32 ............................C CACACATGTCTAGGCATACGCTCCCCGTCAAA 187777 29 96.6 32 ............................C GGCGTATGGGACGCTATAAGTAGTATCATAGG 187716 29 96.6 33 ............................C CATTGTCGTAGAAGTCGCTGAGATCCACCTTGC 187654 29 96.6 32 ............................C ACATCGTCAGCCTGGACGGGAGCGTCACCGGT 187593 29 96.6 32 ............................C CCGTCTGTACTCTTGCGTTTCGCTCTACAAGA 187532 29 100.0 32 ............................. CATACACATAATCATCATTACGATTGAAGAAA 187471 29 100.0 32 ............................. CCTGTCATTTTTACCTCGTCCGGATGCGACCA 187410 29 100.0 32 ............................. GCCCAGGGTGCCATGGTCGCCCAGCTGCCTGC 187349 29 96.6 32 .......................A..... GTGGCGTTACGCTCGTCGCCGCTGTTGATGAC 187288 29 96.6 32 ............................C AATGTTGCATGTCAAACAAATTGGACCTACTG 187227 29 100.0 32 ............................. CATGAGTCGCCTATCTGTCTCATCTATAGTTA 187166 29 96.6 32 ............................G GATATATAGGTAAAGGCATTGTACCTATCCTC 187105 29 96.6 32 ............................C GCGCTGAGTGTGCCCAGCCGTTGTGCCGCGTA 187044 29 100.0 32 ............................. ACCGGGGTCGCGCGCTATGGAACTGAACACTA 186983 29 96.6 32 ............................G CCACCGGCATTAAAACCATTAATTACTTACGT 186922 29 100.0 32 ............................. AAGAGCATTGAAATCCTCACCACCGACACCGA 186861 29 100.0 33 ............................. ACGTGCCTCAGCAGCAGCCACAACAATCTAATA 186799 29 96.6 32 ............................A TTCTGGGCGATTGTCTGCCGATTGAGTACACG 186738 29 96.6 32 ............................G GCGCGTTTTTGGGCTACGGTGATCTCATCATC 186677 29 100.0 32 ............................. GGTCTTGTACTGGCGCAAGTGGCACAAGGTGT 186616 29 100.0 32 ............................. GAAAAATTACATCCTATCGAGTCCATCACGAG 186555 29 100.0 32 ............................. CACGCGCTGGATATTAAAGTCGATCAGGAAAT 186494 29 96.6 32 ............................C CGCCAACAAGCCCAGCAGCAGAGTTATCAAAG 186433 29 100.0 32 ............................. GGTATCTATATCGAGTGCTTAACCAGCAGACG 186372 29 96.6 32 ............................C CGGCCAGCTTGACAATGTAGAGCAGATTCAAC 186311 29 96.6 32 ............................G CATGTACTTGATCCCCACGCCAGGGTCGGAGT 186250 29 96.6 32 ............................G TGGGAGTGACGGACGGTTTTGTGGTCGGAGGG 186189 29 96.6 32 ............................C TGTTACCATAGTCGGATCGTTTCGTGCGCATT 186128 29 96.6 32 ............................C CGGAGCTCCTGCTGGCCGTTCGCCCTCCGAGG 186067 29 96.6 32 ............................G CTGTGGTGTAGGAAAACTTCAGGTTCTGCCTG 186006 29 100.0 32 ............................. AATCTCAATGCGGCCATCAGACGGATAGAGAA 185945 29 96.6 32 ............................C GAAGACCTTCTGGCCTTGCTCAACGACGGTCC 185884 29 96.6 32 ............................A CTGCAGGGTCGATCAGTCGAAGGCCACCATAT 185823 29 96.6 32 ............................G GCCAAGACGGATGATGCACCGGCAGCCGATGC 185762 29 100.0 32 ............................. GATCATCCCCATCCTTGGGTTCGGGCAGGATC 185701 29 100.0 32 ............................. GAATCCACACCGTTGCGCAGGACCTGCGGCAC 185640 29 96.6 32 ............................C CCTACTGCCGTGCAGGTTTTCAAGCTCCTCAA 185579 29 100.0 32 ............................. ATGAGGAACCCCCCCACATATCTCTATGATAT 185518 29 100.0 32 ............................. GAGTTGGTCAAATTTTGGTCTTTGGCTAGCTG 185457 29 96.6 32 ........G.................... GTGGAGCTGATTCAGAAGCAGGTAGCCCCGGA 185396 29 96.6 32 ............................C ACCTCGCATGTGAAGGAGGACGATTGGGAGGA 185335 29 96.6 32 ............................C CGCCAGCTGAACCAGGCTCAGGCTGCTGGCAA 185274 29 96.6 32 ............................C CCTGACTTTCCAATCCTGGCTTGGTCTGCTGG 185213 29 96.6 32 ............................A ACGACCTGGGACAGATGGAGGGGTTCGCCGGA 185152 29 93.1 32 ..................A.........C ACGGGATGTGACCAATGCGTGAAATACAACGA 185091 29 100.0 32 ............................. CGGTACCCAATCAGGTACCGAACGGATAGTAT 185030 29 96.6 32 ............................G TGCCGCGTTGAACCCCTTGCGCAACGTGTCCA 184969 29 100.0 32 ............................. TGAAGACGGCGTTGGCCAAATGGACAACCACG 184908 29 96.6 40 ............................C TCGCCTCCCGATCCGATCAGGCGGACGGGAAGCCGCAGGA 184839 29 100.0 32 ............................. ATGGTAAGCAGGTGTGCGTATCCTATGGCATC 184778 29 96.6 32 ............................C AAAACAACCAGAAACACAGCTAGATGAGCAGA 184717 29 100.0 32 ............................. CTGCACTATCGGCCGGTAAGGTTGGTTCCCTT 184656 29 96.6 32 ............................C AAGGTCGACATCGGCAAACTGACCACCCTTCT 184595 29 100.0 32 ............................. TCTGCCGACGCGCCAGCCTTGGCCTATACCTG 184534 29 96.6 32 ............................C TAATGGTGTGACTTTACGCCAGGCTGTGATAG 184473 29 96.6 32 ............................C CATGGCTGCGGACCCAAGGCCGTCACATCATA 184412 29 100.0 32 ............................. ATCAGCGGGTGGTTGGTCTTACACAGTAGGAC 184351 29 100.0 32 ............................. TAACGAAATTCCGTGAAGGCATATACCGCAAA 184290 29 100.0 32 ............................. TGTAGTATCCCGAATATAATGCTGACTACTGA 184229 29 100.0 32 ............................. TCACACGGATGACCGCTCGTAGTCTTCCATAT 184168 29 96.6 32 ............................C CAGCCATGAATGGCCTGAGGATGTGCCGCTCA 184107 29 96.6 32 ............................C GTGTGCCCGTCGAGTTTTGAACCCTGCGGGGC 184046 29 96.6 32 ............................C GAGATGAAGGAACGGGCTAGGGTCGACAATTC 183985 29 96.6 32 ..............A.............. CGGGATTCACATACCAGACTCCCTCCGTTGCC 183924 29 96.6 32 ............................C CCTAGTCCGAGTGTGGACAGCACGGGAAACCG 183863 29 96.6 32 ............................C GGCACGGGAACGAAAATCTATGAGGAGCTCAA 183802 29 100.0 35 ............................. CCGCAGGAGAACCAGACGAGAACCAGACGCGCGCC 183738 29 100.0 32 ............................. TTTGCCGACGTGACGACCATGGAGATGAAGAA 183677 29 96.6 32 ............................G TGCTGGGGGCCTATCTTGGCTATCCTCACTGA 183616 29 93.1 32 ......T.....................C GGGATCAGGTGCAAGGTGGCAGGTTTGAGTTC 183555 29 100.0 32 ............................. GGCCCTCTGGGCAGGTCCTCGCAGATGGGACA 183494 29 100.0 32 ............................. GCAGCACGCCGGCCTCGTCCTCCACCTGCATG 183433 29 96.6 32 ............................C TGGCCGAAGAGCAGGACGCTGATGGTGACCTG 183372 29 96.6 32 ............................C ACCTTTATCAGTTGATAGAGCCTGCTGTACCA 183311 29 100.0 32 ............................. TTTTGGCGTCCGCGGAGTTGCCGACGGAGTAG 183250 29 100.0 32 ............................. GGAGCAATGATGGACTTGATCCCGTCGAAACG 183189 29 100.0 32 ............................. CTTCGGACTGGGGCTCAGACTTGAAAAGCTAA 183128 29 96.6 32 ............................C CGCTTCGGAAACGCCTCTCGCGGTGATGTAGC 183067 29 96.6 32 ............................C CAGAGGAGGAACACGAATGGATGAATCGATAC 183006 29 96.6 32 ............................C ATCATGCTCGACCGCTACATGCCCAAGGACAA 182945 29 96.6 32 ............................C TGTTATATGGTAGAGAGCTGCTGGTATTGGTA 182884 29 96.6 32 ............................C AGTGCCCTGACCAAGGACCAGGTTCCGCAGCC 182823 29 100.0 32 ............................. TCCTTTTCTGCGAATTCGGTTTCCTCATACTC 182762 29 96.6 32 ............................C GCGCGGGAAGCCTCCTGCACCCTCAGCGCGCT 182701 29 100.0 32 ............................. TCGTTCGGTACGGTCTACCAGGAGGTCATTAA 182640 29 100.0 32 ............................. CCTGGCCCCCTGTATGGGACCAGTGTACGCAA 182579 29 96.6 32 ............................C AGACTGACGTATTTGGTCATTTTGGCTCCGTT 182518 29 96.6 32 ............................G TTATCCCAGTCTTTTCTTCGGTTGTCGGGCAT 182457 29 100.0 32 ............................. TCATCATTATCAAGACCATCAGGACCGACACC 182396 29 93.1 32 ...............A............G CGTGGATGCTGCCCGGCCTGGATCATCTCGGG 182335 29 86.2 32 ................AT..A.......G GCGGTTACTCAGGCCGGGGTCCATATCAAGAC 182274 29 89.7 30 .......T...G................G GTGTACCAGGGTCTGGACTGCCAGCTATTA 182215 29 72.4 0 AGA..........TA..A.....A....G | T [182189] ========== ====== ====== ====== ============================= ======================================== ================== 99 29 97.4 32 GTGCTCCCCGCATCCGCGGGGATGATCCT # Left flank : GCCACGTGACCGCTAGGGTCCGGGATCGACTTTGGGAACGCATCACAGGGCAAATCCGAACTGGCAAGGCCATTATGGTCTATTCCGCCCGCAATGAGCAGCATCTGGGTTTCAAGGTGCATCGCTCGGATTGGGACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGATGGCGGCGACGGCAAATCTGCAGGTGGCGGAAACCGATACCGTCGGACCGGTTGGAGCAATGCCAGCAAGTACAGACGTGCTGCAAAGTTCAGACGGTCGCGTTCTGGCTGAATACAACTGGACCTGCGCTTTTTCAGATGAGCTTTGCCGATGAGGGCCAAGCACTGATTACTGGGTAAGTGCATGGCTAACGAGCACAGTGTTGATGGTCTGAATTGCAATGGCTGAGATGGAAAATAGAGGAGGTTCGAAATGCAAACTCATTAAAAATCAGAGATCTTGTCTATCATATTGTTGGGATTGCAAGGATCTTTAAGT # Right flank : AGCCCTTACCACTGATGGGAGATACAAGCGCTTCTCGCATTTGAGACGATAGGCAATTCTTGATTGCTGTTGTGTTTCCATTGTGCCTCATTATTGGCATTTAGCACGCGTTCTGCTGGATGCCGCCTGTGCGCGATCAGCTTTGCGTTTGCAGTGGTTGCGGCTTTACGCCCGCACTGCGAACGTGAAAAGACCAATGAGGACTTCCCAATGTTTATCAGGTGCAAGTGGGTTAGTTGGAGCTCATGTATTCAGATACTCCCTAAAGGGTTCAAGCTCGATAAACTCGGGGTCGTTGGCCATTTTCCTGACTTCGGGCGGGAAAAGCCGTACCAGCTCGGGGTGGCCATATGCGACGTCAAGCACGCTCTCGATGGCTGCCAGCGGCTCGCCTGCTGTGAGGGCATCCTCCGCGTCGTCCTCCATCAATTGATCGATGCCTCGGATTATTTCCAGGCATTGTCGGGCAACTGCCATCATGGCATCAAAGCTGATATCCG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //