Array 1 50928-44946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJO01000012.1 Neisseria sicca strain UMB0321 .16933_8_31.12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 50927 33 97.0 35 T................................ TCAATAGGAATAACAGAAATATTAACAGTTGACCA 50859 33 97.0 35 T................................ GAATCTCGGCAAGTCCATTGGCAACGTGTTTATCT 50791 33 100.0 33 ................................. ATCTAAATCAATGATTTGCATATCTTGCTTTTT 50725 33 97.0 33 T................................ TCGAAACACTGAAAACCAACACGATAACCCATA 50659 33 100.0 33 ................................. TCGACGGTTATCTTGATTTTCGTTTCTAAATCG 50593 33 100.0 32 ................................. CAGCTTTCAGGCGGTTTGCGTTCAACGTGTTT 50528 33 97.0 33 G................................ ATCTCGAGCGATGCGTGCATAATATCCGACCCT 50462 33 97.0 33 G................................ ATTTTAAGACCTTTGCGGTAATAGGCTAAATTT 50396 33 100.0 35 ................................. AATGCCGTTTTTAATTACTGCCTCTTGTTTTTGCG 50328 33 97.0 33 G................................ GGCTATTCTGCTTCTTGTCTCTTCATCCGCTTT 50262 33 97.0 33 G................................ GCCATAGATTTTATTCACGGAAAAAAAATGTTT 50196 33 97.0 36 T................................ CATCTGAACATATGGGGTCTGTTATGACTTATTCGG 50127 33 97.0 34 T................................ AACCGAATAAGAAGCAGGATTCACACGATCAGGC 50060 33 97.0 34 A................................ AAAGCCTGAAAGACTAACAGATGCAGGCTCAGGA 49993 33 100.0 33 ................................. CATCGGGTCGCAATCGGGAAAGGTCAGTTTGAC 49927 33 97.0 33 T................................ AGCAAAACCCACTATGTCGGTCTGATTATCCGT 49861 33 97.0 34 T................................ GTATGAAGGGCTATCGGTGGCTACTGAAGGCATT 49794 33 97.0 34 T................................ AAGGGCATGCCGTTTTTTGCATAATCGTTACAGG 49727 33 97.0 33 T................................ ACTTAACAAATTCAAATCCATCATGTCGTTACC 49661 33 97.0 35 T................................ TTTAATATCCTTCCACGCCCGCTCAATCAACCCAA 49593 33 97.0 34 G................................ CGGATATGGTGAACCTCAGCAGGAACACCAAACC 49526 33 97.0 34 G................................ TTTAATCCATTCCAATTCTGTCATTTCTTGTCTC 49459 33 100.0 34 ................................. CCTTGTATTACTGTTGATGATGTTCTGAATGGTC 49392 33 100.0 34 ................................. AGGCAATGAACAATATGGTCTCCCTGATGTTCCT 49325 33 97.0 33 G................................ ATATTATCCACGAGAGAAAAGAGTAATGAAGAA 49259 33 97.0 33 T................................ ACTCGCTCGACAGCAGTTATCTTGTTACCAAGT 49193 33 97.0 33 T................................ CGTGTAGGCAGGGCTTAGGAAAATGCCAACCGC 49127 33 97.0 34 A................................ TGCTTTAGCGAGATTAATAGCTTGATCGCCAAGT 49060 33 100.0 35 ................................. TGTTATTGATGTTCCGTCCGATGATTTAAAAAAAA 48992 33 97.0 31 G................................ TTGGGCTTGGTGTAACGCTAGTTTCGTATGA 48928 33 97.0 32 A................................ AAAGACTGGCTGGACAAACTGAAATGTCCTGA 48863 33 100.0 32 ................................. TCTAGCTGCTCCACTCCAGTCACCATTCTGAG 48798 33 100.0 33 ................................. AACGATTCGACCACCAAGCCCGCCGTCGTCCAT 48732 33 100.0 34 ................................. ACCGATGGTTTCCGTGATGACTTGCCAAACCGCC 48665 33 97.0 33 T................................ CTGAAAAATCGGACATATCAATGTCAAACGCCT 48599 33 97.0 32 T................................ AGAAAACCGCCGGGGAATTTCTTGAACAACTG 48534 33 100.0 33 ................................. CTGAAAAATCGGACATATCAATGTCAAACGCCT 48468 33 97.0 32 T................................ AGAAAACCGCCGGGGAATTTCTTGAACAACTG 48403 33 100.0 32 ................................. TTGTCTAAATAGTAACAACTGCATTGACGTAA 48338 33 97.0 32 A................................ ATCTTATCGTCAACACCCGCGAAGACATCCGC 48273 33 100.0 33 ................................. TTTCGGCGGTTTCCAACTTGCTACCTCGACTCC 48207 33 97.0 34 A................................ CCCCCTTATCTAACAGGGGGGGTACAGAAACCGA 48140 33 97.0 34 A................................ AATCAACATAATCCTAACTTTCGTAACGGTTACA 48073 33 97.0 34 G................................ TCGCCAAACGTCGATTTGCCCACACCCTGCGTTT 48006 33 100.0 34 ................................. AATTCCATGCCGTCCGATATTTTGCAAATCATCA 47939 33 97.0 32 T................................ CCTGTATATGCCCGCCCTTGTTGCCTATCGGA 47874 33 97.0 34 T................................ CGATGATGTGGATTACGGCGAGGTCCATTACGGT 47807 33 97.0 34 G................................ TTAATTCGTGAAATACAGCAGGGCGACAAGAAAC 47740 33 97.0 34 A................................ GCGTTGGAATCAACTGTTTTGACACTCGATTACA 47673 33 97.0 34 G................................ AGCCCTATCGGGTGATGGGTGTCTAAATTCTAAT 47606 33 100.0 33 ................................. ATCTGTCTCAACAGCTTGGCAATATCCTTTTTG 47540 33 97.0 33 T................................ TTCGGAGGATAAATTCAAACGAGAACAAAAGGG 47474 33 97.0 35 G................................ CAGTCGTGGGCAAGCAAAGACGATTACCCTGTAAG 47406 33 100.0 35 ................................. GAGCCGGATATGCCGCAAGGTGTGGTGTATAAAAA 47338 33 100.0 33 ................................. ATCGGAAGTAGTTTTGTGTGATTTGAGGTCGTC 47272 33 97.0 34 T................................ CCTAGATAGCCTAGTGTCGACAACGCCATTACCG 47205 33 100.0 33 ................................. GTTGACGCTGCCTGTGCCGTTGCTGTCAATCAG 47139 33 97.0 36 G................................ AGCACATCTGTCGCCGCATTGCGGATTTCAGTAAGT 47070 33 100.0 35 ................................. AAGTTCGGCAATCATAGATTTTTCACGCTCGGAAA 47002 33 97.0 34 G................................ CGCGCTATGGGCGAAGCTGGACGCATTGGACGGC 46935 33 97.0 32 T................................ CGTTGCGCCTCGCCTTGCTCCGTGTAGGCGGG 46870 33 97.0 33 G................................ GCGCCCGTCAAGTTCGGGCTGATTGATGTCGTC 46804 33 97.0 33 T................................ AACCATCGGCAACTTGATTGAAGATGCGGGCGC 46738 33 97.0 33 G................................ TGTGATTGCCTGCCAAACCGCCTGAATTACATC 46672 33 97.0 32 A................................ ACGATTCAACTGTTTTAGCAGCTTCGCCATGT 46607 33 100.0 34 ................................. AAAAGCTCGATGTCGGATTTGACGTCAACCTTTA 46540 33 100.0 34 ................................. TTTTGACAGTTCGTTACCGCCAAGCATCCCGATG 46473 33 97.0 33 G................................ AGCATCATCGGCTGGTGTTTCATCGGCTTTGTC 46407 33 97.0 32 G................................ AGACCCGATACGTCCATCACGGCGGCAAATAC 46342 33 97.0 33 G................................ GCCTATGAAGCCTATCAAGCCGTCAAGGGAGAT 46276 33 100.0 32 ................................. GGCGACTGCCCGAATCGGCGCAACAGTTGAAG 46211 33 100.0 33 ................................. TTGTACTAATAGTTGGTATATTGCTTTCAGCAA 46145 33 97.0 33 T................................ ATTGCCCGCCGTTTAAGGGATACCGCCATGAAA 46079 33 97.0 34 G................................ TCCAATATTAACGGCCTTTTGATAGACCATCATA 46012 33 97.0 34 A................................ CATAATGTGCCGTTGTACTCTGGTTTGATGATTT 45945 33 97.0 34 T................................ TTATTAACCTCCTCTTTTTTTTGTTTTTCATTTT 45878 33 97.0 33 G................................ GGCATAGGGTAGCTAATCCTTTGCCGGGTTTCA 45812 33 97.0 33 G................................ AACGGTTGCACCGATTCGTGCAGCAGACGAAGC 45746 33 97.0 33 T................................ CTGAACAAGCGCAAAGCATGACGGCAGAAAGTG 45680 33 97.0 34 A................................ GCTAACGGATACGTCGAATATCGAAACGCTAAAA 45613 33 100.0 32 ................................. TTCGCCACGAAATCCATCACGCGCAAAGAAGC 45548 33 97.0 32 G................................ ATCACGCCCGATGGACTTCATACTTTCCCAAG 45483 33 87.9 1 ............T.......G.......TC... A GTC [45456] Deletion [45450] 45446 33 93.9 34 .A..........T.................... CAGACACCGCCGAAACATCTTCAGACGGCGCGCC 45379 33 97.0 35 ............T.................... GTTTCTATCCGTAGGTTCGCGCCAGTGGCGCGAGA 45311 33 93.9 33 A...........T.................... TTTAGACTATCTTAAAATGATGAATATTCCTGT 45245 33 97.0 34 ............T.................... CAAAACGCAAAAGCCCGCCTGAATCTTGTTCAGA 45178 33 97.0 33 ............T.................... TTTTAATTTGAGTAATTTCATTTTCTGCCTGCC 45112 33 93.9 35 T...........T.................... TTTGTCAGCAAAAACCTCCGGGAAGATTTTCTCGG 45044 33 97.0 33 ............T.................... TTTTTTTCGTTGTATGCGGGGTTTTGGCGATAG 44978 33 93.9 0 A.....................C.......... | ========== ====== ====== ====== ================================= ==================================== ================== 91 33 97.6 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCAGAAGGGAAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCGCCCGATCAGTGGGTCGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAGCCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGAGAGTTTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CCGTAGCCGAGGGAGCAGATGTAGAGGTGCAGGCCCAGCCATCTTCAGTTAACCATATGTCGACCAGATGGTGCTTTCCTGATTTAACCCGCCTGTAACCATCTGCTTTTTGATGGTTATGTCTGAAAAATCATCTGTGGAATAGGAAATCGTTAATCCATCAAATCTCTGTCTTTCAGACGATTGAAATCGGATTTGTTCTATTCTGATTAAATCGGATTTTTCCAGCTTCGGGCTGCCGGATAAATTTGATGCAATGCAGGGTTTGATTGGCAAGGGGCTGGATAAAAATGGCAGCTTTGTTATAATGAAACTACTGGCAGTTACATACTTTTCTTGGCATTGCGCCGTTTTATTCATATTAACGAAAGAGGAAAACAAAATGTTTCCAGAATATCGCGATTTAATTTCCAAATTAAAACAAGAAGACGCCCACTTCGCCCGTCTGTTTGACGAGCATAATGAGTTGGACGATAAGATTACAGGTTTGGTTAATAATC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //