Array 1 58-862 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNW01000012.1 Salmonella enterica subsp. enterica serovar 4,5,12:i- strain CVM N51287 N51287_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 119 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 181 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 284 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 345 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 406 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 467 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 528 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 589 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 650 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 711 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 772 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 833 29 96.6 0 A............................ | A [859] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGATATTCGCCGCTTTCCATTTACCGAACGTAACG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 874-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNW01000053.1 Salmonella enterica subsp. enterica serovar 4,5,12:i- strain CVM N51287 N51287_contig_53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 873 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 812 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 751 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 690 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 629 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 568 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 507 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 445 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 384 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 323 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 262 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 201 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 140 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 79 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TGAGGCGTACAGGCTGTTAGATGAGAAATTACCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 349143-350086 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNW01000008.1 Salmonella enterica subsp. enterica serovar 4,5,12:i- strain CVM N51287 N51287_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 349143 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 349204 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 349265 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 349326 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 349387 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 349448 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 349509 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 349570 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 349631 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 349692 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349753 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 349814 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 349875 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 349936 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 349997 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 350058 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //