Array 1 20095-19745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXT010000020.1 Bacteroides fragilis strain BSD2780061687_150420_F6 NODE_20_length_54387_cov_23.9923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 20094 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 20031 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 19968 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 19903 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 19840 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 19774 29 93.1 0 .........................G.C. | A [19750] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1420-199 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMXT010000013.1 Bacteroides fragilis strain BSD2780061687_150420_F6 NODE_13_length_144334_cov_24.3392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1419 35 100.0 33 ................................... AAAAAGACAGTGATAATTTGTACCGGCATTCTG 1351 35 100.0 33 ................................... TGCTAAAGACGGAACAATATATTATGCTCCGCA 1283 35 100.0 35 ................................... CCTCTTTTACAAGAAAATCAGAATGCAATTCTGGA 1213 35 100.0 33 ................................... AGACGTATAACATCTCCAGACGCATTGTCACTT 1145 35 100.0 34 ................................... AAATTACAACGTCACTCTAGCAGCAAGCGTAAGC 1076 35 100.0 34 ................................... GAAACCCGACATCCTCTTTTGAAAGCTCAGTTTC 1007 35 100.0 37 ................................... TTAAAGAAAGGCAATTTCACCACGCCGCGCACCGCTT 935 35 100.0 37 ................................... GTTCCAATTTGCATCTCTACTCCAATAAGGAGGTCAG 863 35 100.0 36 ................................... CCAAAAATGATGAAATCATTGCCAAGCGCAGTGGTT 792 35 100.0 34 ................................... CCATGAATACAATTCGAGGAGTTCCGTTTATTGC 723 35 100.0 35 ................................... AAAATAAATGCGCAGGAAAATATCCGCGCCGGTGT 653 35 100.0 34 ................................... CCATGAATACAATTCGAGGAGTTCCGTTTATTGC 584 35 100.0 35 ................................... AGGAAGTTTCTGAAGAGCCTGTACCGCCTGCTAAA 514 35 100.0 34 ................................... ATATGTGCGGGTTGGCATGCATACCGCAAGATGT 445 35 100.0 37 ................................... TGTGTGTCTTTTTTGCTTGGTGTATCTTTCGCGACTT 373 35 100.0 35 ................................... TATATCTTGCCCAGCTGGCGCGTGGAGCATCTTCT 303 35 100.0 35 ................................... TTAAATTTGATGTTGAAGAGACAAACAGCGGGATT 233 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 18 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGTATTTACAACCGATTATTACTCAATATTTTATAGATAATAAGTCAGAAATATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //