Array 1 177550-178493 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LGZJ01000012.1 Escherichia coli strain CFSAN026786 3712-2_S14_L001_R1_001_(paired)_contig_12, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    177550	    29	 100.0	    32	.............................	CTGGCAGCACTGCGGGAAATATTGTTGCTGCT	
    177611	    29	 100.0	    32	.............................	GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC	
    177672	    29	 100.0	    32	.............................	TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC	
    177733	    29	 100.0	    32	.............................	GAGCTGATATTTTGATAACATCAACAGTTCAA	
    177794	    29	 100.0	    32	.............................	ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG	
    177855	    29	 100.0	    32	.............................	CGCAACATCGCCAGATTTGTCGTAGGAAAGCA	
    177916	    29	 100.0	    32	.............................	CTGCTTTCGTTTTAGGCAAGCTGTCATCTGGG	
    177977	    29	 100.0	    32	.............................	CGGAGCGTGTCTTGTGCTGCGTTACGGTAAAA	
    178038	    29	 100.0	    32	.............................	AAAAGGGCCGCATTGACGGCCCTGTGTTATCG	
    178099	    29	 100.0	    32	.............................	TTAGCTGTTAGCCAAACATGTCGACCTGTTTG	
    178160	    29	 100.0	    32	.............................	GGGTGGCGGTGGTGCTGTAATTCACACCGGTA	
    178221	    29	 100.0	    32	.............................	CCCTCCAGTACTGTGATGCGATCTTTAAGTCC	
    178282	    29	 100.0	    32	.............................	ACTGGTTCTGTAACCCAAATTTGGGATCATTC	
    178343	    29	 100.0	    32	.............................	ACTATCGGCGCTGTTCAGTTGGGACAGAAACA	
    178404	    29	 100.0	    32	.............................	CCTCTCAATTTGTAACGTCTGCAATGTCAGGC	
    178465	    29	  96.6	     0	............................A	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  99.8	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank :  ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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