Array 1 5326-7305 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVV01000030.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5664 NODE_30_length_55307_cov_60.457177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5326 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 5387 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 5448 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 5509 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 5570 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 5631 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 5692 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 5753 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 5814 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 5875 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 5936 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 5997 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 6058 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 6119 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 6180 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 6241 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 6302 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 6363 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 6424 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 6485 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 6546 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 6607 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 6668 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 6729 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 6790 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 6851 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 6912 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 6973 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7034 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7095 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7156 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7217 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7278 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23878-25737 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVV01000030.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5664 NODE_30_length_55307_cov_60.457177, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23878 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 23939 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 24000 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 24061 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 24122 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 24183 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 24244 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 24305 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 24366 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 24427 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 24488 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 24549 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 24610 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 24671 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 24732 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 24793 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 24854 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 24915 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 24976 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 25037 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 25098 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 25159 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 25220 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 25281 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 25342 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 25403 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 25464 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 25525 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 25586 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 25647 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 25708 29 96.6 0 ............T................ | A [25735] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //