Array 1 9556-9895 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTO01000020.1 Bifidobacterium longum subsp. longum strain MCC10128 contig0020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 9556 28 100.0 33 ............................ GAGGAATGGGATCGCTGTCCCGCCAGCAGTTAC 9617 28 100.0 33 ............................ TAGGCAGAATCTAATTGCCCAATTTTGGCAGTA 9678 28 100.0 33 ............................ TTCATCAGGAAAAACGACACCAAAGCCAAAGCA 9739 28 96.4 39 .......T.................... TAAACCTCGATAGAGCGATTGCGGTATATGACCTACCCC 9806 28 92.9 34 .......T.................A.. GCGGGGCGACATGCCGTAGAGCCAACGGAAAGAC 9868 28 89.3 0 ....G.........T..........A.. | ========== ====== ====== ====== ============================ ======================================= ================== 6 28 96.4 35 ACCTACCCCGCACACGCGGGGATAAGCC # Left flank : CGGATCCGAAGGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGTTTCAGCAAACCAACCCTCATGGAACAGGCATCATGGTACGCATTCGGCCTATACGCCTACCATCAGCAAGGCAACCAGTGCAAACCCATGTACGTGGAGGGTGAACACTTCAACACGGCTTTACGCACGTTGGCCGATACCGGCGAAGACGTTGACGAGCTCTACAGGAAAATGATGAACGCGCGAAACATGCAGGAGGCCGCACCGTTCTGTCTACGTATAATCCGACTGTTTAACGAGTATGACATTCCATTGGATCACGCCCTGCTGGCATTGGATCTGGCGAGACTCAGCAAACCGGACTCGGCAAACACAGTGCGGCGCGACTGGGGCCGACTGCTCAACTGATTGTCCGCCGGCCTGCGATCAATGGACAATCAACTCAGGAAACAGGTATGCAATTTGCATAGACGGCTCACGCATGACCTCAAAAACGTTGAAAACTAAACT # Right flank : CCCTGTGAGCCACTTTTATTGACATCTGACTTTTCTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 13618-14133 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTO01000020.1 Bifidobacterium longum subsp. longum strain MCC10128 contig0020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13618 28 100.0 33 ............................ GTGACCCCGAGGCGTTCCACTCGTACGGGTGGA 13679 28 100.0 33 ............................ CGCAGGCAATCAATGCCAGCGCCGGCCAGAACA 13740 28 100.0 33 ............................ GAGACTGCTCGGTTCAGCATCAAGATTCCTTCA 13801 28 100.0 33 ............................ CGGTCGTGACTGACTTTGGCGATACTTCAGATG 13862 28 100.0 33 ............................ TGAAGGAACTCCGCGGCGCGGTGTTTGACCTGA 13923 28 100.0 33 ............................ CTGGTCCCGTCCTCCTAAGCGTGAAGCGCATAT 13984 28 100.0 33 ............................ GTTCAAAACACGAACACCTCGGCATCATACAAA 14045 28 96.4 33 ............T............... TAAGACCCTGTACCAGTTCACGATTGATGCCGA 14106 28 96.4 0 .......T.................... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACCCTCCTCTCGGAGGAGCCCGATAACGAGGACACTTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGCCGATTATGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATTCGTACGCGACTCTGGCAACGAATCCTCTCGGAACTCGGCACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAGGACAATACGCCCTGAAAACAGGTACGCAATTTGCATAAACGGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTCTATGGATCGACGCTGATAGGCGCCTGCGCATACTTACCCCGCGCATGCGGGGATGGTTTATTATATGTTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGAAGTGGGGGGTAAAATGAATCATCCAGATCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACCAGCATGAGCATTACACGGAAGCCCTGAAACATTGGAAGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTGATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //