Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUV01000001.1 Listeria monocytogenes strain FRR B 2947 FRRB2947_NODE_1_length_1223423_cov_106.143_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 509835-512713 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUV01000002.1 Listeria monocytogenes strain FRR B 2947 FRRB2947_NODE_2_length_518069_cov_153.661_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 509835 36 100.0 30 .................................... GATTTTCGTGTCGTTTATGTCAGTGATTGC 509901 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 509967 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 510033 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 510099 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510165 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510231 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510297 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510363 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510429 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510495 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 510561 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 510627 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 510693 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 510759 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 510825 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 510891 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 510958 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511024 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511090 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511156 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511222 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511288 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511354 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511420 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511486 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 511552 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 511618 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 511684 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 511750 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 511816 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 511882 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 511948 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512014 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGACTT 512080 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512146 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512212 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512278 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512344 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512410 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512477 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 512543 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 512609 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 512675 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512700,512706,512709] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //