Array 1 18777-18414 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYXP01000002.1 Bacillus pumilus strain CB01 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18776 32 100.0 34 ................................ CTAAAGTTAGCGAAAGTCATTTTAGGGCTGTCAT 18710 32 100.0 35 ................................ ACGCTTGATAAGCCTTGTTTTCCTGATTGTGCTAC 18643 32 100.0 34 ................................ CATATCAGTTATGCTCTTTTTTTCGTTCATCGCG 18577 32 96.9 34 ...................C............ AATACGTAGTTCAGCAAACTATCGAAGTGTACAA 18511 32 93.8 34 ...............G...C............ CCATCCGAAAACTCAGTAATGAGTGATTTTAGTG 18445 32 93.8 0 ............G......C............ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 97.4 34 GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Left flank : TGGATTGAAATTATAATTCGGATGACTTTTCATATCATCCATTCTCGTCGCACTCTATATGAGTACGTGGATTGAAATAACAGGTTTCGCGACACCTTGACCAACCTTTTTGTCGCATTCTATATGAATGCGTAGATTGAAATTCTTCAGCATAATTTTCTAGCTCCACCAATTTCGTCGCACTCTTCATGAATGGGTGGGTTAATAATTGAGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAACTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGACGGAAATCACA # Right flank : GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGTGTCGCACTCAACATAAGTGCATAGATCACTGTTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAAAAATCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAGTTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCGTAATGATCCTTGTATTTATCCACTTCCCACCGATAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19433-19068 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYXP01000002.1 Bacillus pumilus strain CB01 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19432 32 100.0 36 ................................ AGTTCATTGCCCCACACACCGACGGCAGTCCGATTT 19364 32 100.0 35 ................................ CCTTCCTCTACTCGCACACCGTTACCCTGGATGTC 19297 32 93.8 35 ..T........T.................... TATAATTCGGATGACTTTTCATATCATCCATTCTC 19230 32 93.8 33 ...........T......A............. AACAGGTTTCGCGACACCTTGACCAACCTTTTT 19165 32 87.5 33 ......T....T....A.....A......... TCTTCAGCATAATTTTCTAGCTCCACCAATTTC 19100 32 84.4 0 ..........T.....A..G....G..A.... | T [19071] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 93.2 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GCCTGAGACGGTAGGAGAAGCATTCAAAGTAGATGTCATGACCCCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATAAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCGGGTTATGGAAGGCTTAAAATGGACCACGTCATTTCGTAAGACTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTTATTCGACGAAAATGAGAAAAAATGTATATTTTTTAAGGGTTAAAACAAAATTCTATATAGAAACTTAAGGGTTTTGACGATCATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TGAGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAACTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGACGGAAATCACAGTCGCACTCTACATGAGTGTGTGGATTGAAATCTAAAGTTAGCGAAAGTCATTTTAGGGCTGTCATGTCGCACTCTACATGAGTGTGTGGATTGAAATACGCTTGATAAGCCTTGTTTTCCTGATTGTGCTACGTCGCACTCTACATGAGTGTGTGGATTGAAATCATATCAGTTATGCTCTTTTTTTCGTTCATCGCGGTCGCACTCT # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 39391-39160 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYXP01000002.1 Bacillus pumilus strain CB01 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 39390 32 96.9 34 .............A.................. AATAGAATATGAGGAAATGCCCTCAATTCATTAT 39324 32 100.0 34 ................................ CACAATTCAAGGTTTACTTGAGCGTTTTTATCTG 39258 32 96.9 35 ............C................... TCACGTTGTAAATAAGTTTATGTATTGTACTCGCT 39191 32 84.4 0 ............C........C.AT..T.... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 94.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTTGTGCCTGTCAAATATGCGAATGTAGTCGCACTCTACATGAGTGCGTGGATTGAAATGCCGGCTCCATAAACTCATATGAATCAATGTCCTTGTCGTACTCTACAAGAGTGCGTGGATTGAAATATTGACGCTTTACTTTCATATAGGCTGTCATAGTCGTCGTACTCTACAAGAGTGCATGGATTGGGCAGCATCATAGACCAAGTAACCCCCGGACTGGCTCAGTAGTCCATATTTTTAAATAAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGAATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGAGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATCTGATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTCGACTATTATTTCCTAAAAAATGTTACAATTTGGGCGGAGATCGCA # Right flank : GATTGTGTCTTAAACGGGTATGCCACCTAAAAGACCATCTTCTTACAACATCCTCTTTCAGATACAAAAGCCATCAAAATATACTGTTCATTTGTATAGTGAAAACATGACTTTTTGCAGTCATGTTTTTTTCTTCTTTTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAACCATGGCGGACTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGCTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGA # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 39930-39698 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYXP01000002.1 Bacillus pumilus strain CB01 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 39929 32 100.0 34 ................................ TCCTATTCTTGTGCCTGTCAAATATGCGAATGTA 39863 32 100.0 35 ................................ GCCGGCTCCATAAACTCATATGAATCAATGTCCTT 39796 32 93.8 35 ....T........A.................. ATTGACGCTTTACTTTCATATAGGCTGTCATAGTC 39729 32 78.1 0 ....T........A......A.......GGCA | ========== ====== ====== ====== ================================ =================================== ================== 4 32 93.0 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCGGCTAGGCGAAACGAGACAAAACATCTCAAACATTCACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAGTAGACCGGCTGATTTACCAAGAGGGACCTGGCTTTTGGGAGTTTATTGTGGAATATACGACGAAGATGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATTCCTGGAACATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GCATCATAGACCAAGTAACCCCCGGACTGGCTCAGTAGTCCATATTTTTAAATAAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGAATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATTCCCGAGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATCTGATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTCGACTATTATTTCCTAAAAAATGTTACAATTTGGGCGGAGATCGCAGTCGCACTCTACAAGAGTGCGTGGATTGAAATAATAGAATATGAGGAAATGCCCTCAATTCATTATGTCGCACTCTACATGAGTGCGTGGATTGAAATCACAATTCAAGGTTTACTTGAGCGTTTTTATCTGGTCGCACTCTACCTGAGTGCGTGGATTGAAATTCACGTTGTAAATAAGTTTATGTATTGTA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //