Array 1 11083-11477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXB010000053.1 Erwinia amylovora strain 1477-1 Ea_1477-1_contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11083 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 11144 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 11205 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 11266 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 11327 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 11388 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 11449 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-1726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXB010000034.1 Erwinia amylovora strain 1477-1 Ea_1477-1_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 113 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 174 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 235 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 296 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 357 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 418 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 479 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 540 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 601 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 662 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 723 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 784 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 845 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 906 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 967 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 1028 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 1089 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 1150 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1211 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 1272 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 1333 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 1394 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 1455 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 1516 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 1577 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 1638 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 1699 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CGTGAGCGGGGATAAACCGACAAAAGACAACACCCCCCTTACCCCCCCACGG # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12634-14250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXB010000034.1 Erwinia amylovora strain 1477-1 Ea_1477-1_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12634 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 12695 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 12756 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 12817 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 12878 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 12939 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 13000 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 13062 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 13123 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 13184 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 13245 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 13306 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 13367 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 13428 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 13489 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 13550 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 13611 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 13673 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 13734 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 13795 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 13856 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 13917 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 13978 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 14039 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 14100 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 14161 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 14222 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCTCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23714-24042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXB010000034.1 Erwinia amylovora strain 1477-1 Ea_1477-1_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23714 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 23774 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 23834 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 23894 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 23954 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 24015 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //