Array 1 206360-206087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTX010000002.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HAZEL-199 NODE_2_length_710744_cov_37.333645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206359 29 100.0 32 ............................. CCGTTACGGGTTAACAGGTCAATATCTTTACG 206298 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 206237 29 100.0 32 ............................. TGTTGTTTTTCTGACGGGATGACGCGTTGGGT 206176 29 100.0 32 ............................. GCGGTGTTAGCGGTGCTTTATTATCGCGGAGT 206115 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTACGGTTACTGGGCCTTAGCAACAAGATCTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTCGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCCGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGCCACGCAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAGGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACACAGTGAAGTGTCGTGTCTTGAACGTATAGGCGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216529-215706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTX010000002.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HAZEL-199 NODE_2_length_710744_cov_37.333645, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216528 29 100.0 32 ............................. GAAAGCGGCGATATTTCCGGCGTATTGATCCA 216467 29 96.6 32 ............................A ATATGACATTTCGTCACGGTAATAAATTAAAC 216406 29 100.0 32 ............................. CTGGTGGAGCGCCGCGAGGAGTACCTGTCTGA 216345 29 100.0 32 ............................. CATCGGGTTAACGGTTTGTTCGTTCCCTGCCT 216284 29 100.0 32 ............................. GAATTACTGACCTGTACAAACGCTGTAGCGAG 216223 29 100.0 32 ............................. TTTGCAATCAAATAAAATTTTGTGCTTCCCTA 216162 29 96.6 33 ............................T AGGCATTTTCTACCCTGTTGGGTGCCAATACGT 216100 29 96.6 33 ...........................T. CGCTACGGCGCAACACGCGTCCAGTTCGACGGC 216038 29 100.0 32 ............................. GGCTACAAAATTGAACACGAACTGGAGTTCAA 215977 29 100.0 32 ............................. GCGCTGGCGGCGGAATGCGAGAGCAAAAAGAG 215916 29 100.0 32 ............................. GGTTCGCTTCCACTTTCCCCCGCTCATACGCC 215855 29 100.0 32 ............................. CGCGGGGGTGAGTGTGGTTATTCAGTTGGTTA 215794 29 100.0 32 ............................. GTGTGGTTCCAGGTCGTGCTCCGGGAAGGCCA 215733 28 89.7 0 .............C..........G-... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTACATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : TTGCATAATCATAATCTGTGTATCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGATAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1064059-1062198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHTX010000001.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HAZEL-199 NODE_1_length_1166709_cov_31.437596, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1064058 29 96.6 32 ............................A TAGCGGTACGGGTTTTACCGGTACCGGTCGCC 1063997 29 100.0 32 ............................. AATTCACATTTAAGAAACTGATCAAGGACAGC 1063936 29 100.0 32 ............................. CCGGGCTTTGTGGTGATGAAATTCCGCTGTGC 1063875 29 100.0 32 ............................. CGGTTTCAGAAAACGCAGCGCAACACACTGCT 1063814 29 100.0 32 ............................. GACCCCCGGCAGACGATTGAATTAATCGATCG 1063753 29 100.0 32 ............................. CAGATCGAGGTTATGCCAGGTGAGCCGAAAGA 1063692 29 100.0 32 ............................. AAACGTGCCGCCGTCTGGTTAATCAGGATGGT 1063631 29 100.0 32 ............................. CGATTGCCGCCGGGGTGATCTCCCTCTATATC 1063570 29 100.0 32 ............................. CCTGGATATCTCTAATAAAGGTCATTTTCGTT 1063509 29 100.0 32 ............................. TAATAGGTAAATTGTGAATCCGACAACAGCAG 1063448 29 100.0 32 ............................. CTGTCCTGCATACGCTCTACCGCGCGCGCACA 1063387 29 100.0 32 ............................. AAAAAACTATTACTCACCGCCGCGCTACTGGC 1063326 29 100.0 32 ............................. GCATTGGCCCTGTTTTTGATGCGCTTCCGGAT 1063265 29 100.0 32 ............................. TGGAGTGAGAGCGCTAACCTTTCTGATTGCCC 1063204 29 100.0 32 ............................. TCGCACTCACCTCTCTCGCCACAAAACCACCT 1063143 29 100.0 32 ............................. CCGCTGATACTGGTTCAGATGCGAACGGTGCT 1063082 29 100.0 32 ............................. TGAGTATGGTGAACCCTCATCTGTCACCGGAT 1063021 29 96.6 33 ............................T GGGTATTTTTGGCAAATTATCAGCGGCCATCGC 1062959 29 100.0 32 ............................. CCAGTATAGATGCCCACGCATATCTGTAAGCA 1062898 29 100.0 32 ............................. ACAACGTATTCAAAAAAATAGACTCCAGAGAC 1062837 29 100.0 32 ............................. GTGGAAATAAAATCATCAATCATCTCAGGCGT 1062776 29 100.0 32 ............................. CAGGCATTTCTGGCGAAGTCGTCCATGTTGAC 1062715 29 100.0 33 ............................. GAGAGCGAGTCGCCGGCGGCTATTCAGGACAGC 1062653 29 100.0 32 ............................. CTTACGGCACGGCCATAAAGCTGGCGCTATCA 1062592 29 100.0 32 ............................. AAAAAATACGAATTAGTAACTGAATTATCAAA 1062531 29 100.0 32 ............................. CGGAGCGTCGTAAATCGTGGCGTTCTGAAAAT 1062470 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 1062409 29 100.0 32 ............................. CGCCCATATACCGGACCAAGAAGTTGACGGAT 1062348 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGCT 1062287 29 100.0 32 ............................. CGGATCATATAGGTGAGGATTTCCTCTTTTTT 1062226 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCNNNNNNNNNCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //