Array 1 894822-897863 **** Predicted by CRISPRDetect 2.4 *** >NC_015172.1 Syntrophobotulus glycolicus DSM 8271, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 894822 33 93.9 34 .............A..................C TGTACTTATGAGAATCTATTGATTATCATCCCAC 894889 33 93.9 33 .............A..................C CTCATAGGAATCTAGTTTAAATTCAATAAAATC 894955 33 93.9 32 .............A..................T CTATCATTTTTGGCTCAAAAGCATTTCTGAGC 895020 33 93.9 32 .............A..................T GAGAAAAAATGATTGTCGGCCTGTCCATCTTT 895085 33 93.9 31 .............A..................T CGAAAACCCTTGATTGGTAATATTCGTTAAA 895149 33 97.0 32 .............A................... GCTAATTCGGCTTGTGATAAGTCATTTCCGAT 895214 33 97.0 32 .............A................... CTAATCCCGCCCTCTAAAATCCATAATTCCAA 895279 33 97.0 32 .............A................... TACATTTCGATCTGGAACGATAAAATCACGGC 895344 33 93.9 33 .............A..................C AGAAGGGCGTTCGCTATGGCACAGGCCAGGAAA 895410 33 100.0 32 ................................. GACCAGGACCCTTCGCGGCCAGGCTTTCTTCA 895475 33 100.0 34 ................................. AGAACAGCGCGTCCCAGGAGTACGGAACCGCCAG 895542 33 100.0 31 ................................. GGTCCGCTTTGTCGACAGCGAATGGACGGTC 895606 33 97.0 31 ................................T GGGTTCCAGGATCACGCCGGTCTGTTTGTTC 895670 33 100.0 32 ................................. GGTTGACCTTCCAGAAGCGGTCGGCGTAGGGG 895735 33 97.0 32 ................................C AGGGTGTCGATCGCTCTTTTCGTCCTGGCGGT 895800 33 97.0 33 ................................C GGCCCCGTTCGTCAGCATGGCCGAAGGCGACGA 895866 33 97.0 33 ................................C GGCCTGACCGGAAGAAAGAAGGTGTTAAACATG 895932 33 97.0 33 ................................T TCGGCTGGCGAACGGTCCTGAACGAGTACCGGA 895998 33 100.0 32 ................................. GCTTGCGTCTTCGCTTCCGCCATTCTGGGCCG 896063 33 97.0 32 ................................T TCCTGGCGCTGGCTTTCGCGCCCTTCACAAAA 896128 33 100.0 32 ................................. TCGTGTTTCCCCCTTTTGACAGAAAAAAGGTC 896193 33 97.0 33 ................................T CAGATATGTTTATCTAATTAGATTTTAGTACTT 896259 33 97.0 32 ................................T TACCATATCCCAAACAGGAAGAATTATTTTAT 896324 33 100.0 32 ................................. ACATTAAAATCCGAATACCCAATATTTATAGC 896389 33 97.0 34 ................................C TCATATCTGTTATTGTCATATTATATCGGGCGCC 896456 33 100.0 34 ................................. AAATTACATTGACATCGAAGCCGATAACTGGGCA 896523 33 97.0 32 ................................T TGAGATTATTGTTTTGTTATGATTATGATTTG 896588 33 97.0 32 ................................C CGCTGCTTGGCCTTTTGGCTGTCTAAATCGTC 896653 33 100.0 34 ................................. CGTCGAGAGCCAAATCATTCCCGACATCCCCGAC 896720 33 97.0 32 ................................T CTTTTACCTCCGGCCATTTGCTTTTAGCCATC 896785 33 97.0 33 ................................T AACTAGGATCGCTGAAAATAATTGGCCTGGCGT 896851 33 97.0 33 ................................T TCTTTGCTAAGATTTTTTAATTCTGCTGTGTCC 896917 33 100.0 33 ................................. ATCTTAAATTCCTTAAAGGCCTGCAAGATCATG 896983 33 97.0 32 ................................T TCTAGCCATTTTTCTATGCACGGCAAACAGGT 897048 33 97.0 33 ................................C TCGGTTTGAATCATTTCAGGACGCGCGGGACAC 897114 33 97.0 32 ................................G GGCATTATACTTTAGGCATACCTATTAGGGTT 897179 33 97.0 32 ................................C GCATTATGGTCTGGATAATAGCGCGTTACGAA 897244 33 100.0 32 ................................. TTTCAAGCCCCGTGTTAAAAAAGCAGTATTGG 897309 33 97.0 32 ................................T AGCGAAGTCCATGCTTGACCTTGGCCCCGCGT 897374 33 97.0 32 ................................C AGCCGTTCAAAGTAATTATCGTCTACTATAAC 897439 33 100.0 32 ................................. GCGTCGGTCTCTGCGATTTTGCTGATGTATTT 897504 33 100.0 32 ................................. AAGAACAAAGTTTAAGGAATTATGCACTTTTT 897569 33 97.0 33 ................................G AAAAAGCGGGATTGATTGTATACTGCAAAGATG 897635 33 97.0 33 ................................T TCTTTTTTCCTCCCCTCCCCCACTCCGTAACAT 897701 33 100.0 33 ................................. TAGCTTTCTGCCATGGCTCTGAACCAGTCTCCC 897767 33 97.0 31 ................................G AAGTAATCGGTCATCAGAAAAAGTTTGATAG 897831 33 84.8 0 .........TT..T.....T............G | ========== ====== ====== ====== ================================= ================================== ================== 47 33 97.2 32 GTCGCACCCCGCAGGGGTGCGTGGATTGAAACA # Left flank : ATTGAGGATTATCCACCATTTATCTGGAAGTAGGTGGTCAGCAATGATGGTATTGATAACTTATGATGTCAATGTCACAACGGATTCGGGGAAGAAACGTCTTTACAGGGTTGCCAAACAGTGCAAGAATTTTGGGCAGAGAGTACAAAATTCAGTGTTTGAGTGTTTGGTGGATCCGACGCAGTTTACCGAGCTAAAGCACCGGTTGGAAAGCATAGTTGATCCTGAAAAGGACAGCTTGCGCTACTATTATTTGGGAAGCAACTGGAAAAGACGAGTTGAGCACTACGGCGCCAATGAAGCTTATGACCCGGAGGGGGTCCTGATCATTGATGCGAACGGGAAGTGAACATTAATTTCCCGGTAAGTTCGCAACGGTGAAAATCTGCGGGAAAGATGTTTGTATGTGAGTATAGGGTGCAAAATTAGCTAAGCAGAAAATAACTTTCGCAAAACAAGGCCTTGAAATGCTTTGTTTATAATATTTCCCTTTAGGGGCT # Right flank : GGTGAACATCGTAATAAGTATGCCATCAATCTCAGTCTTCATCCTTCATGGGCCGACAGAAAGAGGCCAAGGCCCTGGTCAAACGCGGGGAATGGGGGAAAGGGCCCGAAGACCCGGAAAAGCGCCGAAAGGCTGATGAAACTCTGTAAAGGGTGTGAGCCGAACTCGGTTGACGGGCCAAAATGGACACTGGTGTCCATTTTGACTGATGCCAGGCCCTCCTCTACTGAGGCTGCGGAAGGGGAGCGGAATGAAAAAGAGTGCTTCGGAAGAGAAAGTAATCTTCCCCAAAATACCAAATGGAGGATCTTTAAAGATAAGGTTATTGCTGCTTATGCTGCACAAAGAGATTTGAGAGTCTTTAACCAACAGTCTGTATTTACAATACATAATTCCATCAAAATATTAGAAAAAATTCACGAGGAAATTGGGCAGGCCAACCAGTTCCATCATCAAAGACCTCTTAAACAAATGATTATTCCGGCCGCAAAAAGCGTTAG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCAGGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1392092-1393713 **** Predicted by CRISPRDetect 2.4 *** >NC_015172.1 Syntrophobotulus glycolicus DSM 8271, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1392092 29 100.0 37 ............................. GAATAGCAAACTTACAGGTATTATTCTCTCGGCCGAC 1392158 29 100.0 37 ............................. GTCTTTATGTTCACATTACACTGAAGAGTCCGTCTTG 1392224 29 100.0 36 ............................. GTCAGCATAAATAACTAAATTATCCACGTTATCCTC 1392289 29 100.0 37 ............................. GGCCTCCACATTGTACGCCTCCCCTACCTCCGAGGCC 1392355 29 100.0 39 ............................. GGAGCCAGCATTGGGCCGCTTGTAATGCCGCCCGTGGCC 1392423 29 100.0 38 ............................. GATCAACATCCTTGATAGAATCAATGACCAAGAAACTC 1392490 29 100.0 38 ............................. GTTGATTGTCAATGTCGATACGGTATATATCCATACAG 1392557 29 100.0 38 ............................. GTTGATTGTCAATGTCGATACGGTATATATCCATACAG 1392624 29 100.0 38 ............................. GTTGATTGTCAATGTCGATACGGTATATATCCATACAG 1392691 29 100.0 38 ............................. GTGGTTTCAAAGTACGAGAATAATATTCATACTCCCAA 1392758 29 100.0 37 ............................. GGATTTTGATTTCATTATAGCATCGTTCCGTATAAAA 1392824 29 100.0 39 ............................. GGGCCTGTCCCCGGAGATTGAAATTGATGTCGATGACAC 1392892 29 100.0 38 ............................. GACTACTACTGAAGAAGCCTTAGCCATCTTTCCGGATT 1392959 29 100.0 39 ............................. GTAAATTATGGCCGCGCCGTCAACCTTGAAATAGTATGA 1393027 29 100.0 35 ............................. GTTCGCTGTTATCTATTCGCTTGCCGCGAAAAAGT 1393091 29 100.0 36 ............................. GCCTGCTGAAGCTTATAGGCCATGATATATGACCAG 1393156 29 100.0 38 ............................. TTTTCTAACTCCAACGCCTGCTCATTGCCCTCGGCATC 1393223 29 100.0 37 ............................. TCGATCACATCAAGCACGGACTGACAGGTCTTATACC 1393289 29 100.0 37 ............................. TTAAGTTACTTATTGATAGTCAGTCTGAAATGGCAAG 1393355 29 100.0 37 ............................. TAGGTGATCAGCATCAAGGGTGATCAGGCTGCGGGTA 1393421 29 100.0 37 ............................. CGCAAATGTGAAATACTGTGTCCTTGATATCGACTGG 1393487 29 100.0 37 ............................. CGGACGATACCGCTTAAACGAGATAACCCAGACCCAG 1393553 29 96.6 37 ...........G................. CTCCTATGGCTTCCTGTAATTGCCCTTCCAATTCTTT 1393619 29 96.6 37 ...........G................. CTTGATCACGTTGTCTTCAGAGATATTTACAAACTGC 1393685 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 99.6 37 CTTGTAATTTAACCAGAATGGAATGTAAA # Left flank : TGATCTGGTGGTGAAAGGCAATGTATATTATACTGGTTTATGATATTGAAATGGATGAAGGCGGAGCCAGGGCTTCCAGACGGATTTTCAAAACCTGCAAGAAGTATTTGACTCATGTACAGAAATCGGTATTTGAAGGAGACATTACTCCCGCTCTGCTGAAAAAGCTTCAGGCGGAGCTAAGCGCTTATATTAGAGAGGACCGGGACTCCGTATTGGTTTTTAAAAGCAGAGAGGAGCGATGGCTGCAAAAAGAATTTTGGGGCAAAGAGGATGATAAAACCTCTAATTTTTTCTAGGGTTTTGGATAATGAGGTTTTCTGTCGACCGGGGATAGTGTAATTTTTCCCGGAGAACGACAAAGCATTGATATGCCTGGAAAATGTGTATGATGACAGCAGACTTATCTGGGAAAATAGGTGTTGATTTTGGGTGCCACCGTATAGATCGACAGAAATTGAAGGTGGAGGCCTTGATATAGGCCGGTTTCAGGAAGGAAG # Right flank : ACGCTGCTGGGGGATACCTGATAATGACCGATACCCCGTTTTACAGACACCCTAAACACCAAGTACAATAAAAATAAGAGGTGTTTGAAAATGGCCAAAAACTTTGATCAAGCGTATAAGCTGGAAATCTGTAAAAGAGTGGTAGAAAACAGAGAATCAGTGACGGCAGTTGCTCGTGAAGTAGGTATTTATGAAAACACTGTATACGGATGGGTAGCCAGATACCGTCAGAACAGCAGCAAGCCCTTTGTCGGCAGCGGACATGTCAAAGCAGAAGATGAGGAATTAAAGCGACTTGCAAAAGAAAACAAAGAACTTAGAGAAGAAATAGAAATATTAAAAAAGGCGGCAGCTTACTTCGCGAAAAACCAGAAATAGAGAAATATAAGTTTATCAAAGCTGAATCCGCAAAGTATAAAATAGCGAAGCTGTGCAGAATACTTCATGTTTCTAGAAGCACATATTATGTATGGGATAAACCACCTGAAAGCAAAAGAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGTAATTTAACCAGAATGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //