Array 1 6558-7649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBQQ010000068.1 Veillonella ratti strain MSK.5.16 NDGKCHIA_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6558 36 100.0 30 .................................... GATATGAGCGAACGAGGTAAATATTTAGTA 6624 36 100.0 30 .................................... AAATATGCCCTGATCTGTATCTGCCTCTAT 6690 36 100.0 30 .................................... GCAAGTCATTACACGATATACGCCCGCTTT 6756 36 100.0 30 .................................... AACATGGCGGCGCATGGCTTTGTGTATCAT 6822 36 100.0 30 .................................... ACGTAAGACAATCAACGGCGCCGGTGTTAG 6888 36 100.0 30 .................................... TACAAAAAGCCGTAATAAAGAAAGTAAAGG 6954 36 100.0 30 .................................... ATGGTTTTACGCGAACGCCTGAAATCATAA 7020 36 100.0 30 .................................... TACAATAAACCTTGTTGTTCCGTGTAGTTT 7086 36 100.0 30 .................................... AAGAGAAATCATGTATGACCTTGCTATGAA 7152 36 100.0 30 .................................... TATCCGTATAAGTCTGTTTGTTTTCGCTAT 7218 36 100.0 30 .................................... TATACTCATAAGACTCCCAACAAGTGAAAG 7284 36 100.0 30 .................................... AGGTCGGCAGGATTCGGCGCGAAATACTAC 7350 36 100.0 30 .................................... GCCAATTTTTGGCGGCAAGGATATAATATA 7416 36 100.0 30 .................................... TTTCTTTAACGATGATGAACTAAAGATGAT 7482 36 100.0 30 .................................... CCGGCATATGCTGTAATGTATAACAATGAC 7548 36 100.0 30 .................................... CGTACGCGCTAACGGAACGTTATGACAAAT 7614 36 91.7 0 .............................T.A.T.. | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.5 30 GTTTGAGAGTAGTGTAAAACTAGTTTGGTCTCCAAT # Left flank : TTCTATTGCGACGGAAGATGTAGGACTTTTATTTGAAATCAATCAAAAGATTCAAGAACTGTTTATGGCTTTAGAGGGGAGTTTAAGCCTTGATGTAACCTATAATAATCTCATAACTGCACAGGATATTGTAAAGTTGGGGAATTTTATGATTTGCGATGATGAATTTGACGATATTGGTAAAGTTATTAGTTTTATTGAAGTAGTCGTGGATTTGATCCGGCCAAAGTTATTAGTTATGCTCAATCTGCGTAAATTTATGACAAATAGTGAATTGGAATTATTTTTTGAGACAATTTTGTGTAAAAAAATACCTGTTTTTTGTATAGAAGGTAGTGATGCGGAAGAGATTTCAGTTGTTCAAGAATTAGAAGTATTATATACTTTAGATAAGGATTTATGCGTGTTTTAACTGACTGACTAGAATTACACCTGCCTCGTAAGCTGAAAAATCTCTCAAATCTTTAAATTCAGCATTTTGGGTAAAAATGCAATTTGGG # Right flank : TCATTTGTCAATAAATAGTATGAAATATCCTCTCTTTTTATACTGATTTAATCAAAATTGTACATTCATATATCATCAGTTTTGTGCGTATGAGAGTATCATTTATAAGCTTTATTTCGGCTTTTCTGTAAAAGAGCCAATTTTAATAGTTGTATATACTATCGTGTTATTTGATGCTGTAAAGTATGTAAGTCTAGTAGTGGCGTTTGAGAGTAGTGTAGAGCTAGAGTGGTCTAATTAGTGTATAGGGATAAGTGTGCTTTATTCGTACTTATCTCTATACAATATCTCGTTTTCTAATATTCCTCACAAAAAAATGTAAAAAAATTCATTTTGCCTCTTGCACACAAATTAAAATCGTGCTATTATATTTAAGTACCTGAAACAACGGTATTGCGGCCCCGTGGTGTAGCGGTTAACATGTCGCCCTGTCACGGCGAAGATCGTCAGTTCAAATCTGATCGGGGTCGCCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAAAACTAGTTTGGTCTCCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //