Array 1 3-235 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXM01000112.1 Staphylococcus felis strain F5 k127_445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 29 .................................... TGAAGAAATCGAACAATTAAAATCTGAAA 68 36 100.0 30 .................................... TGATCCAGGGAAAGGTAACTTATACACGGC 134 36 97.2 30 ..............G..................... ATGATGTACGTACCATGTACATTGTCCCCA 200 36 86.1 0 ........G................T....C.T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AAG # Right flank : CATTTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAACTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGACAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.12%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4-1614 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXM01000019.1 Staphylococcus felis strain F5 k127_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 29 .................................... TTTTGAAGATTTACCAGTAAGGACTTTAA 69 36 100.0 29 .................................... GTACCACTAAAGCTTTCGTCTTTCATGTT 134 36 94.4 30 ........G................A.......... AATGCTAATGTTAAAGAAGCAGACCTTACT 200 36 100.0 29 .................................... CCTGACTCTAGACGAATGATACTTAAAGC 265 36 94.4 29 ...................A.....A.......... GGTGCAGTCATATCATCTCGTGAATTAAA 330 36 94.4 30 ............C................A...... TGTCTAACGGAAAAATCAATGAGGATACAA 396 36 97.2 30 .............................T...... GATAATACTCGTCACAACATTAGCGTTACA 462 36 100.0 30 .................................... GGTTACATTGCCTAAATATATGGTTGTGTT 528 36 97.2 30 ..............G..................... TTCAGTATTATCGTTACCACCATTAACACG 594 36 94.4 30 ..............T..........A.......... CGAGAGATGATATGACTCCACCTGCTCTGC 660 36 94.4 30 ........G......................G.... TCCATAATCTCCGAATTCTGACACAATACT 726 36 86.1 30 ........GT...............AT........T TAGTAATCCTGGGCACGTTGCAATAGTGGT 792 36 97.2 30 ..............G..................... AATGAAAGAGAAAGCATTTTCCCTGAAAGT 858 36 97.2 29 ..............G..................... AGCAGGTCAACAGTTAGTCGTATAATCAA 923 36 97.2 29 ........G........................... CTTCCGAAATTGAATGTTGGTACATGGTT 988 36 94.4 29 ............C............A.......... CATAATTATTTTTGTTGGTGTATACTAAA 1053 35 97.2 30 ......................-............. GATAGCGCATGATTAGTTGTGTAATGATAA 1118 36 100.0 29 .................................... AATATTTTCATAGCATCGCTTCTCCTTGA 1183 36 100.0 30 .................................... GACATTCAATCTCTTTTCATACGAAGAGTT 1249 36 100.0 30 .................................... ATTAATCCAATTACCTAAAGGGTTAATCGT 1315 36 100.0 30 .................................... TAACCAGTCACGTTCTTTTCGCCTTTTTGT 1381 36 100.0 30 .................................... ATAAGGCCACGAAACCATTGCACCAACTTT 1447 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 1513 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 1579 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 97.4 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : CACG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //