Array 1 151617-151846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFF010000001.1 Bifidobacterium pseudocatenulatum strain YIT11949 YIT11949_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 151617 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 151668 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 151719 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCTACGGA 151770 24 100.0 28 ........................ CTTAGGTGCTTATTTTGAGCCGCTTGTG 151822 24 83.3 0 C...........CA.......G.. | C [151845] ========== ====== ====== ====== ======================== ============================ ================== 5 24 94.2 28 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGCCGGGTCGGGTTGGTTGTCGAAAGCGTGCTGGCGGGCGTCGATCTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGCATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATTGGCGTGGCGACGTTCTCTTCCTTACCGTTGATGATCATTGCGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGCCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCTCGGTCGAAGCTCCGTGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGAGATGAACGTGTACGAATCGGCTATGTTCTTGGAAGGAAGGGGAAGATGATGATGAACGGTGAGTTGGCAGGATTTACGATTCCTCGGCTTGGTATGGGAACGATGGCTTTGGCGATTGAGGGGCGTCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTCCGCTATTTGGACACGGCTTGGTCATATTATTTGCCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 443571-441347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXFF010000002.1 Bifidobacterium pseudocatenulatum strain YIT11949 YIT11949_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 443570 29 100.0 32 ............................. TGAAGCAGCAGACAGCCGCCGAAAACCTGAAA 443509 29 100.0 32 ............................. GGAGCTTGTTGTGCACAGTTCGTTCTGACATA 443448 29 96.6 32 ............................G AAAGGCGACTACATCACCGGCCTGAAAATCGG 443387 29 100.0 32 ............................. CTTCCTTTCACGGCGAGAGTCTTGATGATGCG 443326 29 100.0 32 ............................. GCGAAATACCGCAACTGGCTCGTCAAAGGCAA 443265 29 96.6 32 ............................A TGGAAACCTGCAGGTCGGAGACACCATTTTTG 443204 29 100.0 32 ............................. GCCACCGGCTCGGTCATCACACTGCACGACAC 443143 29 100.0 32 ............................. TCATCGAACACGACACGGGCAGCGCTCTTCGC 443082 29 100.0 32 ............................. AATGCCGTGTGGCTGCTGACTATCGGCACGCC 443021 29 100.0 32 ............................. ATCGGACTCACAAGCAAGGACGTGGCCAAGGC 442960 29 96.6 32 ............................T CGTCAGGCTTGTCCGTGGAATCTGAATCATCC 442899 29 100.0 32 ............................. AGGTTTGCGGTCGCCTCCTGCATTGGCTGGAC 442838 29 100.0 32 ............................. TGCCAACCTGTTGGGCGGCTGCGGCTGGATAC 442777 29 100.0 32 ............................. TATCGCCAAGCAGGTTCGCGGCAAGTTGCGTG 442716 29 100.0 32 ............................. GCCTTGACGGCATCATCGGCGTTGCCGGTGAT 442655 29 100.0 32 ............................. GGCGACCCCTCGCTATCGTTCGTGGACATGGA 442594 29 96.6 32 ............................T CATGGATAGGACCGAAATCGCCGCGCTGGTCA 442533 29 100.0 32 ............................. GGGGTAAACGGATTCTGTCCCTTGAACGAGCC 442472 29 100.0 32 ............................. TGAAAAACGAAAACAGTTTCCCAATCATGCTG 442411 29 100.0 32 ............................. AATGGCTGAAAGAATCGCAATCCTCGGTGGAG 442350 29 100.0 32 ............................. GTATGCTCAATATGTTGCCCTCGGCATTAAAA 442289 29 100.0 32 ............................. AAAACATTACACGACTACGATACAAGAATAAA 442228 29 100.0 32 ............................. GAATACCGAACCGGCACGACTTAAGAATAGCA 442167 29 100.0 32 ............................. CGGACTTGTTGCCGGCATGGTCCACGCTGCGC 442106 29 100.0 32 ............................. AATACAATTACATTGTCGTTGACTTTTCACAT 442045 29 96.6 32 ............................T TGAGCTCATTCGATAGATTCGTGTTGGCAATG 441984 29 100.0 32 ............................. AGAAAGGGGTATCCGTTTGGTTTGAGCTCGGC 441923 29 100.0 32 ............................. GCGTCGGCGTCACGTAATCAGAGTGTGGACAA 441862 29 100.0 32 ............................. TGGTGGCACAGCGCTTCGAAAAGGTCAACTTC 441801 29 96.6 32 ............................T GCAGATTACGGCGACGACCACGAATGACACGA 441740 29 100.0 32 ............................. CACGCGCCCTCACCGGTGGAATCATCCACCTT 441679 29 100.0 32 ............................. CCATCCCAATCATCCGAGAACCTGACGTTCTG 441618 29 96.6 32 ..A.......................... GCCAGGCATCCGGCGATTCGCCTACCGTCACC 441557 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 441375 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 35 29 98.9 36 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACCAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : AATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGCCAAAAACACCCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //