Array 1 117717-116773 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQEV01000014.1 Escherichia coli MP021561.2 gecMP0215612.contig.13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 117716 29 100.0 32 ............................. AGAATGCTTTTAATCTTCATAAATTAACCTTT 117655 29 100.0 32 ............................. CGCTTTCAGACAGTTTTCCAACTCTGGTGTAC 117594 29 100.0 32 ............................. TGCATCCTTTAACTATTGGGTACCTGGTTAGC 117533 29 100.0 32 ............................. AAATATTAGGGTTTCGCGCTACGTTCGACACC 117472 29 100.0 32 ............................. GGCTGGCAGCGTATCCTGGTGCGTGAATTAAC 117411 29 100.0 32 ............................. CCGAGTAAGTCGAGTTCACGGGCGCGGGATTC 117350 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 117289 29 100.0 32 ............................. TGTTAATAAAAAAGGCCGGTTTCCCGGCCTGA 117228 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 117167 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 117106 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 117045 29 93.1 32 .T..........C................ TGTTTTAGAGATGTGTATTCAAAATCAGATAG 116984 29 100.0 32 ............................. AAATTGATCCCAGGGTGATTATCGTGGGGATC 116923 29 93.1 32 .T..........C................ ATTTCTTTAATTATTTAGCTGATGCTTTTAAA 116862 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 116801 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTGCTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144926-143921 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQEV01000014.1 Escherichia coli MP021561.2 gecMP0215612.contig.13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144925 29 100.0 32 ............................. TATCCGTTGCTGAATATGCAACCGTTTTCGGT 144864 29 100.0 32 ............................. CGGGTTGATATAGCGCTGCTGCGCGGTCATTG 144803 29 100.0 32 ............................. GGTCTATCTTCCTGAGATACGCGATCTTGTAG 144742 29 100.0 32 ............................. AAAGATGCGGTTTACGTATTCTCCACGCAAGA 144681 29 100.0 32 ............................. CGCTTTAACCTGGCTACCGTAGGGGGCAAGAC 144620 29 100.0 32 ............................. AAACCTATGCCATCTATCAGTTTAAGAGTGAC 144559 29 96.6 32 .................A........... ATGCAACAGGTGCCAAAGCCCCCGACGGCACC 144498 29 100.0 32 ............................. CATGAGCCAGGACGACGCCCGGTCCGAGGGCG 144437 29 100.0 32 ............................. CGCAAAAACCATTTTTTCCCAGCTGGAGGTTA 144376 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 144315 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 144254 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 144193 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 144132 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 144071 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 144010 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 143949 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45111-43563 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQEV01000028.1 Escherichia coli MP021561.2 gecMP0215612.contig.27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45110 29 100.0 32 ............................. GGCTTCCGGGTGACGGGCGTACAGGGTGAGCA 45049 29 100.0 32 ............................. CGATTACTGAGTCGTTCACGAACCGGCCACCA 44988 29 96.6 32 ........T.................... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 44927 29 100.0 32 ............................. TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 44866 28 89.7 32 .....-......CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 44806 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 44745 29 86.2 32 ......T.....CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 44684 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 44623 29 93.1 32 ............CA............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 44562 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 44501 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 44440 29 100.0 32 ............................. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 44379 29 93.1 32 ............CT............... ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 44318 29 93.1 32 ............CT............... TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 44257 29 93.1 32 ............CT............... GCAGCGGCCTGATGATGATCGATATGAACGGC 44196 29 89.7 32 ............CA...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 44135 28 93.1 32 ..........-..A............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 44075 29 100.0 32 ............................. TAATTCAGGAAATGAATTCTAAAATTGAATCT 44014 28 86.2 32 .........T-.CA............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 43954 29 93.1 31 ............CT............... TGACTTTTATGAAATTTTTTCTTAAAAAACT 43894 29 89.7 32 .........T..CC............... CGGTAACGCAAATATGATCCGATGTCGTCAGG 43833 29 93.1 32 ............CA............... GACAGTCACTATGTTCGGTATGTTTAAAAAGA 43772 29 93.1 32 ............CA............... TTACTTTTAAAATAAATGTCTATATTGGCTCA 43711 29 96.6 32 .............C............... TTCGAGCACGGCCATGTGGAACTGTTCAGTGT 43650 28 89.7 32 ..........-.CA............... TTACGCATTGTGATCGGGATTCGCTTCAGACG 43590 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 93.8 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCTGGATAACCCACATTCTGCCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGGTAAATTCATGCCTTGGGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGACAGGGCGGTATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGTTTATATATACAGTGTTTTTAGGTGGTCGGAGGTTGTGTCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCTCAGGATTATACTTCCAGTGAGCTAGACTTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //