Array 1 200529-201411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHJG010000004.1 Escherichia coli strain R1123 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200529 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 200590 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 200651 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 200712 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 200773 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 200834 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 200895 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 200956 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 201017 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 201078 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 201139 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 201200 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 201261 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 201322 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 201383 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227129-228805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHJG010000004.1 Escherichia coli strain R1123 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227129 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 227190 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 227251 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 227312 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 227373 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 227434 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 227495 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 227556 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 227617 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 227679 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 227740 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 227801 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 227862 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 227923 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 227984 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 228045 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 228106 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 228167 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 228228 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 228289 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 228350 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 228411 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 228472 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 228533 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 228594 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 228655 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 228716 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 228777 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //