Array 1 3388426-3387169 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMFW01000001.1 Mesorhizobium sp. Root1471 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================== ================== 3388425 36 100.0 30 .................................... TCAACGGGTAAGTTGGAAAAAAGTGGAAAA 3388359 36 100.0 30 .................................... CAGTACACCTGCTATAATATGCCGGTGACG 3388293 36 100.0 30 .................................... CATGCCTCCGAAACAGGGCCGTGGCAAAGA 3388227 36 100.0 30 .................................... CATGCGAAGTCGACAGCGTCGACCAGCGCG 3388161 36 100.0 62 .................................... CAGTCGGCTTCATGCTGCGCGGCGAGCTTNNNNNNACTACTCGCTGGACCATGTTCGCTTCC 3388063 36 100.0 30 .................................... GATCCCGCCGCGCAGCAATTGCTTGGATGA 3387997 36 100.0 30 .................................... CGGCCCGCTGATCTGGGTCGCGAATGACGG 3387931 36 100.0 30 .................................... GGGTAGCCGCAATGATCTGCCAAGCAGGCC 3387865 36 100.0 30 .................................... TAAAATCGACTTCATATATCCCGCTATTGA 3387799 36 100.0 30 .................................... TTGAGGATGTTGCGGAGGATAGCCTGCTCT 3387733 36 100.0 30 .................................... TTTTGCTGTGTTGCAACACGGGGACGCAAA 3387667 36 100.0 30 .................................... AACTATGACGGCGCAACGAAGCCGGTTCTG 3387601 36 100.0 30 .................................... GTGATCAACAAGGCGGCGCGCACCGGCCGC 3387535 36 100.0 31 .................................... CCCTATGGCCGATGAGAAAAAGGAGCTGGAG 3387468 36 100.0 30 .................................... ACGTGCTGTTTTGTATAGGTGCAACCATGG 3387402 36 100.0 30 .................................... CTGCTGGATGTTCTTGACCCAGCGGAGGTT 3387336 36 100.0 30 .................................... GATAGTCATCCGCAGAAGGATACGATTTTG 3387270 36 100.0 30 .................................... TTGGCTGGAGAGAGGGATGCGAGGGCCACC 3387204 36 91.7 0 .............................C..T..G | ========== ====== ====== ====== ==================================== ============================================================== ================== 19 36 99.6 32 GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Left flank : GTCGAAGGAAACAGGATTGCGAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTCCGCTGGGTCGTCCGCCCCGAACACGAAAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTGGCTTGGGCCACTGTAAGCGGCGTCATGGGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCTCATGACGTCGAATGCCTATGCCTATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTAAGAGGTGGCTTAACAACTTGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCGAATCCATTGTCGATCATCCACTGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTCGCTGGACCATGTTCGCTTCC # Right flank : GCGCGCGGCGACCGGCTTGTCTCCAATATGCCCTACCGCCATTGGAAGCCCCTCAGGTTGGCGCTCGAACAGTTCGGTGGCGACATTACAAACGTGCCGTCGATGGATATTTGGAACTCGGGCACCGAAAGCGAGAGGGACTTCCGCGCCCAAAAAGGTAGTGAGTGCAAACTATTTGGGACGTCCTCAACCAGATCACCTGCCTAATTAAGCTTACCTTACCGCATCGAAATCCAGCCCGAACCGCAAAAGGTATTTGCGTAGGCGGTCGGCATCGTTGCCGCTGGCCTTTTGAAGGCGGGAGACAGCGAAGAGCTTGCGACCCGCGGCACTGACAGTGGTGCTTTCGCGACAGACGTCGATCACAGTCGCCAGTTGAGCACGATCGAAGAGGTCGATCTCTTCGACGCGGTCCACGCCAAGGATAGCCCGCAGTAAACTATCCGTGGAAACGTCCTCTCCGGCCGACGCCCAGAGCAACCGGAGGCGCTCGATCTCGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 3389168-3388736 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMFW01000001.1 Mesorhizobium sp. Root1471 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3389167 36 100.0 30 .................................... TCGATACGAGGGCGACACTTACGGTATCTC 3389101 36 100.0 30 .................................... GATCATGGTGCGGGATCGTCTGTCGTTCTG 3389035 36 100.0 30 .................................... GAAATCTGCCAACGACATACCGAAATGATA 3388969 36 100.0 30 .................................... TTGTGACCGTCGAAGGAAACAGGATTGCGA 3388903 36 100.0 30 .................................... TCCGCTGGGTCGTCCGCCCCGAACACGAAA 3388837 36 100.0 30 .................................... TGGCTTGGGCCACTGTAAGCGGCGTCATGG 3388771 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Left flank : TTCCCGCCTCTCCAATTCCGTCGCTTGCAGCCGATGCCTTGCCGTGAACCAGGTCTCGCTGCTGTCGGGGTATCGCATCTTGTGGATCATGGCGCTTTTCGATCTTCCGGTATTGACCAAGGCCGAGCGCAAGCGGGCGAACAAGTTCCGGCTGTTCCTGCTCGACGAGGGATTCTCGATGATGCAGCTCTCCTGTTACATCCGTTTCACGGCAGGCAAGGAGCAGGCCGAGGCGCTCACCCGGCGTATCGGTCGCGCCGTGCCGGATCCAGGCACTGTCGAGGTGATCTGGTTTACGGACAAACAATATGAAGGCATCCAGAGCTTTCGCGGCCGCGCTTCGCCGACCCGGCCGGGTAAGCCTGACCAACTGACCCTATTTTGACACTGATTCGCCGGGAAAATGGCGTGACTAAGCGGCCAAACCTCACTTTTACTGACACTTTTTCATACCTAAACGCACAAAAAACCCCCGGAAAACAAGAGGTTTTCCGGGGGCA # Right flank : CTCATGACGTCGAATGCCTATGCCTATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTAAGAGGTGGCTTAACAACTTGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCGAATCCATTGTCGATCATCCACTGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTCGCTGGACCATGTTCGCTTCCGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTCAACGGGTAAGTTGGAAAAAAGTGGAAAAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCAGTACACCTGCTATAATATGCCGGTGACGGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCATGCCTCCGAAACAGGGCCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //