Array 1 2049-3724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGMY01000247.1 Escherichia coli strain 703098 NODE17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2049 29 96.6 32 .A........................... TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 2110 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 2171 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 2232 29 100.0 32 ............................. AATAGTGCCTAGGTTGTACCATTTTTGATGTT 2293 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 2354 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 2415 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 2476 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 2537 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 2598 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 2659 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 2720 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 2781 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 2842 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 2903 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 2964 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 3025 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 3086 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 3147 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 3208 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 3269 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 3330 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 3391 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCA 3452 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 3513 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 3574 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 3635 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 3696 29 89.7 0 .A........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29424-30063 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGMY01000247.1 Escherichia coli strain 703098 NODE17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29424 29 96.6 32 ............................T TTCTACCCTGTTCGGCTACCAGCAGCGACTGC 29485 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 29546 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 29608 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 29669 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 29730 29 96.6 32 .....T....................... TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 29791 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 29852 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 29913 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 29974 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 30035 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //