Array 1 201157-200700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZG01000019.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N42232 N42232_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 201156 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 201095 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 201034 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 200973 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 200912 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 200851 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 200790 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 200729 29 100.0 0 ............................. | A [200702] ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGGGGTGTACCACGGCATGATGACGGCCAGCCA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12403-10320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZG01000010.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N42232 N42232_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 12402 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 12341 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 12280 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 12219 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 12158 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 12097 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 11994 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 11933 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 11872 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 11811 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 11750 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 11689 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 11628 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 11567 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 11506 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 11445 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 11384 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 11323 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 11262 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 11201 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 11140 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 11079 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 11018 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 10957 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 10896 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 10835 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 10774 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 10713 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 10652 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 10591 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 10530 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 10469 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 10408 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 10347 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 34 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGTTGATCGCCGTGGCGGTGAGATTAGAAACGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 337-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZG01000069.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N42232 N42232_contig_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 336 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 275 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 214 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 153 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 92 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGGGGTATTACGGCGACACAGCGCTTGTTGTCT # Right flank : GAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1952-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZG01000008.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N42232 N42232_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1951 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 1890 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 1829 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 1768 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 1707 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 1646 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 1585 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 1524 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 1463 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 1402 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 1341 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 1280 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 1219 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 1158 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 1097 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 1036 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 975 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 914 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 853 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 792 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 731 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 670 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 609 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 548 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 487 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 426 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 365 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 303 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 242 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 181 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 120 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GATTGACAACAGTCTGCTTACCCGAGCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 263-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYZG01000009.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N42232 N42232_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 201 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 140 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GGCACAATTTGTGCTTTTGCAATTCACTTTGAAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //