Array 1 1961-525 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHL01000015.1 Lachnoclostridium sp. An76 An76_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1960 32 100.0 34 ................................ CTCTATGTAAGGAAAATCATCCCCGGACTTCGTG 1894 32 100.0 33 ................................ TCCGCTTTCAGGTCAATCGCCGCCTGCATTTCT 1829 32 100.0 34 ................................ TGCCCGCTCTATCGCCATAATACAGCATGGCGAT 1763 32 100.0 36 ................................ AGCTCTTCTTCTGGACTTATCAGATCCAGTTTTTTC 1695 32 100.0 35 ................................ GATGATAGATACAAGTTCAGTTGTGCAAACGTATA 1628 32 100.0 37 ................................ AGTACAGTGTGCTGAACACCGAGAAGCTCGGAGCGAC 1559 32 100.0 35 ................................ CGAGGTTATTAGTGGAAATACTACCGCAGTAACTA 1492 32 100.0 34 ................................ CCACGGAAATGCTATTATAACAAGGTAGGTCGCA 1426 32 100.0 36 ................................ ATGAAACTTAGCCTATCCGGTAGTTACGACATTTAC 1358 32 100.0 34 ................................ GACTGTAATATAATCATATAGCTGCTGTTTCACG 1292 32 100.0 32 ................................ CGGTGAAACAAAACAGGTTATCCTCGAACTCA 1228 32 100.0 37 ................................ TGCTGGTAGATCAGCATGTTATTGCGGACGGAATAGT 1159 32 100.0 36 ................................ TTAGTTCCTCGCTACATTTAGCAAGTTTGCATCTTC 1091 32 100.0 34 ................................ TATTAATGATAAATACAGCATCATTCTTGATTGT 1025 32 100.0 35 ................................ CGTAAAAAGAAAATAGGATCGTAACGTAAGCGCTG 958 32 100.0 35 ................................ TGCTGTAATCCCACTATTTACAGCATCTGCATTTA 891 32 100.0 35 ................................ ATCTTCTTTTTCTTGAGCTTTTTCCGCGGGCTTGT 824 32 100.0 37 ................................ TTTATCATTTGTTTGCACGCCGTACAGTAAGCCTTAC 755 32 96.9 34 ...............................T CCGACAGCCTCCAGCGCATCCGTCCAATACTGGT 689 32 93.8 35 .............T.................T CTGTACTGATCTCTCGCCCATCGGATCGCTTTCTG 622 32 96.9 34 ...............................T CCATGAACAGGAATGCTTTAAACAGATTGGCATA 556 32 71.9 0 ......T...T.A...A..TAA.....A...T | ========== ====== ====== ====== ================================ ===================================== ================== 22 32 98.2 35 GTCGTTCCCCGTGCGGGAACGTGGATTGAAAC # Left flank : TCAGCGGACAAAGTATATTCCACTTTTCCGGACCGGTATTCTTCATTCCACTTTCGTATCTCCTCGCGGACATAAGCCTCCGGGTCGTCCGTGATTTTCAGGAGTTCAGAATGTTTGCCGAACTTGATTATATTTTTAGATGTAACTTTTTTCCCGTTGCGAAATCCCTGCTGACCATAATAGGTAGGGTCTTTCAGGCGTTTATCAAAATAGAGCTTCAATCATTATCACCTCAAGACCATTATACCATAAACATGCAACACATGCAACATATAAAAAGATAAAATTTGACAAAAAAATACCGCATTTCTGCGGTTTGTAAGAATTTATTGATGATTCAACTGTTGAAAACCCGAACATAGAATTCCAGGGGGATTCGCACCGTGATTTTGAGGTGAAGTGAGAAGAAAAGCGTGCTGGAGGTTGTATTGAACGAAATTTATTGGTATAATTGCATAGGTAAGAGCAAAAAGCACAAAGGAAATTTGTGGATGATTGCG # Right flank : ACTGAAGCTGCAATGGGAGAAATAGTGTGATTATCTTTATCGTGAAAGCATCAATTTATTTAAGAAGTTTTAGTTGAAATACAGATTTGTGCAGGCAATCCAATACTGGAACTGCGATAAAACGATAAAAAATAAGAATGGTGTAAAAGAAATTTCCTTTTACACCGCCCTTATTTTTACATTATTGTAAAACTCGTTATTTCAATCCACAGGTTCCTGTTCCTGACCACAAATTATTGTATCAAATAAAAAAAAATACTTCAATAATTTTTATTATAATTACAATTTCAACGAATTTTAAAATATAAATATTGATTTTTAAATGAATGAAGAGTATAGTAACAATAAATGGAAGAAAAAGTGGAAATAATCGAATTGCTATTGGATTTAAATATAAATTATCGGAATATATAGCGCAATTTTTTGAGTGTTAAAAGCTTTAATATATTGTTGCTGATTTCATGAGCTGTCACCAGACTGCTCTCATGAGTTGTCTTTAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCGTGCGGGAACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 859185-853001 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFHL01000001.1 Lachnoclostridium sp. An76 An76_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 859184 33 100.0 34 ................................. AATAAGAGTCATCGACAATGACGGCATCGATCAA 859117 33 100.0 36 ................................. GCCTTGAGGATGCAGACGCTGGCAGTCGTTCCGTAC 859048 33 100.0 34 ................................. AAGTTTCAGCAAGCCTTCCGGCGTCAGCCAATAT 858981 33 100.0 34 ................................. TATATTACACCTTTTAAGGTGTTTTGTCAACACT 858914 33 100.0 35 ................................. AAATGAAAAAGAAAACGCCTGAGCAAGAATTAAAG 858846 33 100.0 33 ................................. ACACAGAAATCATATTAAATTTTACACAAAACT 858780 33 100.0 35 ................................. TGTGTATGACATGGGATATGATCGCGTGGGGTGTA 858712 33 100.0 35 ................................. CAAGTACGTTTTCAAGCAGGCTCACGGGGATAATC 858644 33 100.0 35 ................................. TCCCCATGTGTGGTACTGATTCGCTGGCAGTTCAA 858576 33 100.0 36 ................................. GCCAGATACTTAATAACTTTATTCTCCCGGCTGTCG 858507 33 100.0 33 ................................. GATGATGAAGTACTCGGGCAGGTCCGCAATAAT 858441 33 100.0 33 ................................. GATTGTAGCGTTATACTTAACTCCTGCCGCTAC 858375 33 100.0 37 ................................. CCGTTATACTCAAACATGTCTTACCTCCTACGCTGAT 858305 33 100.0 35 ................................. AATATGAGATATCGCTCGGCAGGGTAGATATACAT 858237 33 100.0 35 ................................. ACAGGTATCCAGTCGGCTTGGAATGGCCTGACCGG 858169 33 100.0 34 ................................. CAGACCATAGGCAAAATACGTTTTAAGCGATGTA 858102 33 100.0 34 ................................. AAGATTACTCGGAACTGGATGCCGTCGGCTTTCT 858035 33 100.0 33 ................................. CTGTCTGTCCGTCCAGTAAGACATCTTCGGTTA 857969 33 100.0 33 ................................. AGAAAGTTCTCAACAAGCTTAATACGCTCGATG 857903 33 100.0 34 ................................. GGACTGATATCCGCATTTTTGATCAAGTATTACG 857836 33 100.0 34 ................................. CCCTCTTTTTCTTCAATCTCAAGAACTGTTTGGA 857769 33 100.0 34 ................................. AGAAGAATTTGTATGTGAAAGTGATGAATGCATT 857702 33 100.0 34 ................................. AGGTTGGTTCCAGTATTTCCGGAAACTGTTGCTT 857635 33 100.0 34 ................................. TATGGGACGCTTCAGGAGTTTCAAGATAAAGTCC 857568 33 100.0 34 ................................. ACAGAATAACCGTTCATTTCAAGATACTTTTTGC 857501 33 100.0 34 ................................. AGCCAGTGGGTAGGGTTCTCCGGGTTGCAGGCTC 857434 33 100.0 34 ................................. ACTACGAATGGGTGTTCGAGGTGAGCTGATGGCA 857367 33 100.0 34 ................................. AATCTTATCTATGTTTCGATAGATTCCGTCTGCC 857300 33 100.0 35 ................................. CTTGAGTAGTATAGCAGAGGACGTGTCCAAAAAAA 857232 33 100.0 34 ................................. ATATTGTTCCATGCCTGCGACACGGAATTTTTCA 857165 33 100.0 35 ................................. GTCCCACACGAAGTACAAAAATTTGATTTCGCATG 857097 33 100.0 37 ................................. ATTATTTGGCGATATGGCGACTTCAATGGGAATATCT 857027 33 100.0 34 ................................. GCATACATGAATGAGGGCGGTAGAGGCGAACTTA 856960 33 100.0 35 ................................. ATTTGTCTTCCTCTCTTTCCCCTGTTCTGAAACAC 856892 33 100.0 36 ................................. TTCATCCGGCGTGGCGATTTCCGCATCCGGGATACC 856823 33 100.0 34 ................................. AGGTGGATCAGGTCCAGGGAGTAGAGTTTGTGAT 856756 33 100.0 34 ................................. GTCGAAGGCTGACTTCTCCTGTTCGGTCTGATCA 856689 33 100.0 35 ................................. ATCTGCGATCCGTGAATAGTCATCCTCGCTCTCTG 856621 33 100.0 36 ................................. TATGGAATTGAATATTATTTCACTCGTACAGACGAA 856552 33 100.0 34 ................................. CTCATACGCTTGCCGAAAGTCCTCACAGGGCTCG 856485 33 100.0 36 ................................. ATATTTCCCTTTCGCCATCAGGCTCACCTCGCTTCC 856416 33 100.0 34 ................................. CGTAGTTGAGTCCTTGCTGTGACAGCCGTCTCAG 856349 33 100.0 36 ................................. GTTTGTAGCAACTGCGATTCTGTGGAATGGGATCGT 856280 33 100.0 35 ................................. CGACAACGGCATTGTAGCCATCAATGATTGGTGCT 856212 33 100.0 33 ................................. TGCTTTCTTCGCCCTGTACTCAGCTTTTTCTTC 856146 33 100.0 35 ................................. ATCAATTCGGATGAAGACCTGTCAGAGTGCTTCAA 856078 33 100.0 33 ................................. ACAACGGACACGGTGGCAACATCGTCGCTGTCA 856012 33 100.0 34 ................................. CCACGTGTATTTAGATACGGATCTGGCGCTAGTG 855945 33 100.0 33 ................................. ATTTACAAGGATTAGAACCACCAGAAATGGTGA 855879 33 100.0 34 ................................. AAACTCTACAGGGAAATCTGACAGCAACCGTGTA 855812 33 100.0 35 ................................. GTCTTTATAGCAGCTATATCTGCACTGTTAGCTGC 855744 33 100.0 36 ................................. AAGATAACACAGCACCTCATAATATGACTGTTTGTT 855675 33 100.0 35 ................................. CTCGTCTGTTGATGCAATTGCTATAGGTGTTCGTT 855607 33 100.0 33 ................................. CGTGCTGAAATATAGAAGCGGAAGCACGGGCGA 855541 33 100.0 35 ................................. AATACGAGATATCGCCCGGCAGGGTAGATATACAA 855473 33 100.0 34 ................................. CACCTGAACCCGGATAAGTGCGCGAAGAAGCCGG 855406 33 100.0 35 ................................. CCTGATGAAGCAGGAAGAAAACAAGGCAATCTGCC 855338 33 100.0 33 ................................. AGTGGTACATGGTCATAGCATCTCAGCTCTGTG 855272 33 100.0 36 ................................. GGCATGGACTATGTGGAGAAATTCCTCGGCGCGGAC 855203 33 100.0 36 ................................. CTCTGCAATGCAGTGAATCGCTACGGAATATACATC 855134 33 100.0 35 ................................. AATTCAATTTGCGTAGACGCTACGGTCAAGATGGT 855066 33 100.0 34 ................................. GCAATCCCGATATCCTACAATAATTTCCCGGACT 854999 33 100.0 33 ................................. ATCGAGCACGCTATCAAGGTCGTACCTGTAACA 854933 33 100.0 34 ................................. ACTCTGAGTCAATCCCAAAGCTTTACGAAGCTCC 854866 33 100.0 35 ................................. AACAGAGAGGTGGACAGAATATGACCACATTCGAA 854798 33 100.0 35 ................................. TCTTTTACCGCAGCTTCTACGATGCGTTGAAAAAC 854730 33 100.0 35 ................................. GACAATATTCCTAACAGAGTAACCGATTACTATTT 854662 33 100.0 34 ................................. ACCTCCAAATCTGCATAAAAAGCGGTTCTAATTC 854595 33 100.0 33 ................................. GTGAGATACGCCGCCAGCTCCGCAAAGTCCTCG 854529 33 100.0 35 ................................. CCGGTATGCTCCCGTATACATGGTAGTACATTCCC 854461 33 100.0 34 ................................. AAACCGATGTGATGCAGCCGATGCTTCAGGATTT 854394 33 100.0 37 ................................. TGATATCTTCCTCATGCGTCTTGCGAATTTTCTCGAT 854324 33 100.0 35 ................................. AGGATATACGCTCCATCCCCAAAGATGCCCTGATG 854256 33 100.0 35 ................................. GCCTGATAATTTGTGATCATGGTGTTGTGTGACTG 854188 33 100.0 36 ................................. TTCCAGCGGTACGACTAGTACGATTAACTCTAGCGG 854119 33 100.0 34 ................................. CACCGTGGTTCACTCCTTTCACAGAACAGGGTCA 854052 33 100.0 34 ................................. GATATCCCAGTATCGGTACGACTGCCGGATCCCT 853985 33 100.0 36 ................................. AAAGATCATTACTTGACGTGCTATATAATCGGGGGA 853916 33 100.0 35 ................................. ACAAAAACCTCTTGACTTTTGCATATCGGTATATT 853848 33 97.0 37 .....................T........... CATATCAACGACGGTTTCACTGTTGACGAGTTGAACC 853778 33 100.0 35 ................................. TTTCGACGGATTAAATCCGCCTTCTTCTGCCCGTT 853710 33 100.0 35 ................................. ATCTTAAAATTAAGTATACTGCTGAAAAGCTAATG 853642 33 97.0 34 .......T......................... TGTATAATCTCTAGTTGAACGTATGTCGTCTTCT 853575 33 100.0 33 ................................. ATCCGTATCACTTGCAGGGATCGGGCGTGTATG 853509 33 100.0 35 ................................. ACAAAAACCTCTTGACTTTTGCATATCGGTATATT 853441 33 97.0 37 .....................T........... CATATCAACGACGGTTTCACTGTTGACGAGTTGAACC 853371 33 100.0 34 ................................. GGTATCAAATGGCACATAAAGCTCATTTGCGTAT 853304 33 100.0 34 ................................. GTCAACGAGCGTCCGGCGATGTTACCCTGAGGCG 853237 33 100.0 35 ................................. CTCGTGTATTTGAGCAGTCTGTTGAGTCTCTTACA 853169 33 100.0 34 ................................. ATCATTCAGGAGATAACCCTCTGGCGCTTTTGTC 853102 33 100.0 36 ................................. GCCCTGGCCATCCCCGGGATGCCCAGCGTTACTTTT 853033 33 81.8 0 ............CGT...A.TA........... | ========== ====== ====== ====== ================================= ===================================== ================== 92 33 99.7 35 GTCGCTCCCTGCATAGGGGGCGTGGATTGAAAC # Left flank : GTATTCCTGTGGAAGTGAGGTGGCGGAATGCTTGTGCTGATCACATATGATGTGAATACAGAGACCGCGGCGGGAAGGAAACGGCTGCGGAAAGTCGCAAAGCAGTGCGTAAATTATGGAAGAAGAGTGCAAAATTCTGTTTTTGAATGCATTTTGGACAATGCCCAGTGCGTTACCTTGAAAGCAATATTGGCAGATATTATTGATGAGAGTGTTGACAGCCTGAGATTCTATTATTTGGGAAATAAGTATCAGACAAAAGTGGAACATATGGGTGTTGACCGTGGAATTGCAGTGGATGATACGTTGATTTTGTGATAATATAAGAGTGCGAATAGGAAGCGGACATAAAAATGCCGGGGGATTCGCACTCTTAAATGTGCACAAACGGCGTGTTTTGTAGACGAAGAGGGGATGAAAAAAGGGGAAATTTAAGTATTTGAAATGATAATTTGTCGATTTCTGCTGAAAATGAGGAAGAATTTTTGGCTGAAATTGCG # Right flank : CATATACTATGAATCGATACGTAATAGCAAAAAAGACCTTATCGTGAATTCTTTTCAAAGAATAGTGGACTTCCAGAGGTATACATATCGAAAGTGTAGGAATGTGTTCATAAATGAAAAAGAATTATATGGAGGGGCGAAGCGTTTTGAATCAGATTATGGCATGTCATCATCATTCCGCCGGCTTTGTAAAGGGAAGCTGATATAGGAGCAGGCCATTATATTGTTAAGGCATGAGCACCTGAAATACGGATTGATGAATAAGATAGACATGCTATATGATGAAGCGTATGAGCTGGCACAGCGTAAGTATAATTATAAGACGGCTCTGGAAAAATTCAAAAAGAAGAATGGATTGTAGAATGGAAGTGAGTGTGTGGTAAGAATTGAAAAGTTGGAGATGACGGATTCGGCAGCAAGGTATAAATATTACCCAGAAAATTCTGATGGTAGTGGAATTGTTGCACTAAATAGGAATACAGGGTAGAGAATCTTAGAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTGCATAGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //